I've tracked down my problem with pgxs to Makefile.global in lib/pgxs/src.
These lines seem to be the culprits:

bindir := $(shell pg_config --bindir)
datadir := $(shell pg_config --sharedir)
sysconfdir := $(shell pg_config --sysconfdir)
libdir := $(shell pg_config --libdir)
pkglibdir := $(shell pg_config --pkglibdir)
includedir := $(shell pg_config --includedir)
pkgincludedir := $(shell pg_config --pkgincludedir)
mandir := $(shell pg_config --mandir)
docdir := $(shell pg_config --docdir)
localedir := $(shell pg_config --localedir)

I think it should be running $(pkglibdir)/bin/pg_config

-- 
  Gregory Stark
  EnterpriseDB          http://www.enterprisedb.com


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