On Tue, 11 Aug 2015, Roni Maimon wrote:

>    Hi,A 

>    Yaroslav A andA Richard, thank you so much for the quick and very helpful
>    reply!

>    Though I only received it through the daily summary, so I am sure this is
>    the wrong way to reply.

>    Yaroslav, regarding the permutator "dance", is it necessary in cases where
>    I have several betas in each run?

I would say that the answer is " it is an active area of the research "
;)  how many runs/conditions per run do you have?  may be you could then
use even more aggressive/conservative way of permutation -- swap
complete order of trials (I hope they were randomized/different across
runs) across runs.

-- 
Yaroslav O. Halchenko, Ph.D.
http://neuro.debian.net http://www.pymvpa.org http://www.fail2ban.org
Research Scientist,            Psychological and Brain Sciences Dept.
Dartmouth College, 419 Moore Hall, Hinman Box 6207, Hanover, NH 03755
Phone: +1 (603) 646-9834                       Fax: +1 (603) 646-1419
WWW:   http://www.linkedin.com/in/yarik        

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