Your message dated Mon, 06 Jan 2014 11:00:09 +0000
with message-id <e1w07uj-0005yz...@franck.debian.org>
and subject line Bug#732202: fixed in hdf5 1.8.12-3
has caused the Debian Bug report #732202,
regarding libhdf5-openmpi-dev: pathways for mpi.h not picked up with the linked 
include <mpi.h>
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
732202: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=732202
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: libhdf5-openmpi-dev
Version: 1.8.11-5
Severity: normal

Dear Maintainer,

I installed libhdf5-openmpi-dev to build against Field3D GPU stack and wanting 
to build for parallel switched from hdf5 serial to hdf5 openmpi.

Result: 

<mpi.h> not found.

Solution:

Edit H5public.h to change the following:

#include <mpi.h>  

to

#include <openmpi/mpi.h>

Not sure if this is a proper workaround, but I can cleanly build Field3D now.


Sincerely,

Marc J. Driftmeyer



-- System Information:
Debian Release: jessie/sid
  APT prefers unstable
  APT policy: (500, 'unstable'), (1, 'experimental')
Architecture: amd64 (x86_64)

Kernel: Linux 3.11-2-amd64 (SMP w/8 CPU cores)
Locale: LANG=en_US.utf8, LC_CTYPE=en_US.utf8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/bash

Versions of packages libhdf5-openmpi-dev depends on:
ii  hdf5-helpers                1.8.11-5
ii  libhdf5-openmpi-7           1.8.11-5
ii  libjpeg8-dev [libjpeg-dev]  8d-2
ii  libopenmpi-dev              1.6.5-6
ii  zlib1g-dev                  1:1.2.8.dfsg-1

libhdf5-openmpi-dev recommends no packages.

Versions of packages libhdf5-openmpi-dev suggests:
pn  libhdf5-doc  <none>

-- no debconf information

-- debsums errors found:
debsums: changed file /usr/include/H5public.h (from libhdf5-openmpi-dev package)

--- End Message ---
--- Begin Message ---
Source: hdf5
Source-Version: 1.8.12-3

We believe that the bug you reported is fixed in the latest version of
hdf5, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 732...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Gilles Filippini <p...@debian.org> (supplier of updated hdf5 package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256

Format: 1.8
Date: Sat, 04 Jan 2014 19:55:21 +0100
Source: hdf5
Binary: libhdf5-7 libhdf5-7-dbg libhdf5-cpp-7 libhdf5-cpp-7-dbg libhdf5-dev 
libhdf5-openmpi-7 libhdf5-openmpi-dev libhdf5-openmpi-7-dbg libhdf5-mpich-7 
libhdf5-mpich2-7 libhdf5-mpich-dev libhdf5-mpich2-dev libhdf5-mpich-7-dbg 
libhdf5-mpich2-7-dbg libhdf5-mpi-dev libhdf5-doc hdf5-helpers hdf5-tools
Architecture: source all i386
Version: 1.8.12-3
Distribution: experimental
Urgency: medium
Maintainer: Debian GIS Project <pkg-grass-devel@lists.alioth.debian.org>
Changed-By: Gilles Filippini <p...@debian.org>
Description: 
 hdf5-helpers - Hierarchical Data Format 5 (HDF5) - Helper tools
 hdf5-tools - Hierarchical Data Format 5 (HDF5) - Runtime tools
 libhdf5-7  - Hierarchical Data Format 5 (HDF5) - runtime files - serial versio
 libhdf5-7-dbg - Hierarchical Data Format 5 (HDF5) - Debug package
 libhdf5-cpp-7 - Hierarchical Data Format 5 (HDF5) - C++ libraries
 libhdf5-cpp-7-dbg - Hierarchical Data Format 5 (HDF5) - C++ Debug package
 libhdf5-dev - Hierarchical Data Format 5 (HDF5) - development files - serial ve
 libhdf5-doc - Hierarchical Data Format 5 (HDF5) - Documentation
 libhdf5-mpi-dev - Hierarchical Data Format 5 (HDF5) - development files - 
default M
 libhdf5-mpich-7 - Hierarchical Data Format 5 (HDF5) - runtime files - MPICH2 
versio
 libhdf5-mpich-7-dbg - Hierarchical Data Format 5 (HDF5) - Mpich Debug package
 libhdf5-mpich-dev - Hierarchical Data Format 5 (HDF5) - development files - 
MPICH ver
 libhdf5-mpich2-7 - Hierarchical Data Format 5 (HDF5) - runtime files - MPICH 
version
 libhdf5-mpich2-7-dbg - Hierarchical Data Format 5 (HDF5) - Mpich Debug package
 libhdf5-mpich2-dev - Hierarchical Data Format 5 (HDF5) - development files - 
MPICH ver
 libhdf5-openmpi-7 - Hierarchical Data Format 5 (HDF5) - runtime files - 
OpenMPI versi
 libhdf5-openmpi-7-dbg - Hierarchical Data Format 5 (HDF5) - OpenMPI Debug 
package
 libhdf5-openmpi-dev - Hierarchical Data Format 5 (HDF5) - development files - 
OpenMPI v
Closes: 648537 721202 732202 733046
Changes: 
 hdf5 (1.8.12-3) experimental; urgency=medium
 .
   * debian/rules:
     + Simplify DEFAULT_MPI retrieval
     + Simplify build_openmpi detection depending on arch
     + Enable arch arm64 for openmpi to be consistent with debian/control
   * mpich2 to mpich transition (closes: #733046):
     - s/mpich2/mpich/g
     - libhdf5-mpich2-* transition packages
   * Introduce pkg-config files for the -dev packages
     (closes: #721202, #732202).
   * Install /usr/bin/h5p{c,f}c with mpi-dev packages
     (closes: #648537).
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hdf5-helpers_1.8.12-3_i386.deb
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hdf5-tools_1.8.12-3_i386.deb

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