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sebastic-guest pushed a change to branch upstream-master
in repository pktools.

        at  36cdcc9   Merge branch 'master' of 
Merge after edit in myfann_cpp.h in Windows

This branch includes the following new commits:

       new  c0472d6   Initial import
       new  61d71ee   versions automatically extracted from config and support 
for mask values in pkinfo min/max values
       new  24cc89b   support for mask values in pkinfo min/max values
       new  70f56cf   support Optionpk without default value
       new  620ca4f   support ratio in
       new  65c92b7   introduced --enable-las and --enable-fann in
       new  3cc2c2b   support spectral filtering in pkfilter using tapz option
       new  60d243a   support spectral filtering in pkfilter using tapz option
       new  2faf0b5   support spectral filtering in pkfilter using tapz option
       new  32dfd49   introduced --enable-nlopt in and 
pkgetchandlier and pksetchandelier in src/apps
       new  ece91d6   support of angles in morphological filter
       new  d93429d   support of osavi, mcari and tcari in pkndvi
       new  8c9e2c5   increased version to 2.3
       new  8be6f56   findSubstring in Optionpk.h and default interleave from 
input image
       new  21adc69   before changes at home
       new  d01ec13   pkclassify_svm is working
       new  63cc6bc   smv is installed per default (no need to enable in 
configure script), update README, SVM_COPYRIGHT
       new  bd1c222   added and
       new  59e07e8   support of nodata in pkinfo when calculating histogram
       new  2e876d2   updates in Changelog
       new  e12d767   added pkascii2ogr, SensorModel.h and pksensormodel
       new  d1421ac   included matrix_vector_operations.h in SensorModel
       new  ca44543   included matrix_vector_operations.h in SensorModel
       new  d079041   VERSION in
       new  29a3ca8   VERSION in
       new  7fa9657   before xmas holidays, see Changelog
       new  094c17f   added feature selection
       new  a73cc3a   cross validation for pkclassify_nn
       new  3531dce   feature selection with automatic detection of optimal 
number of features in pkfs_svm and pkfs_nn
       new  e6a281f   added OptFactory.h and
       new  9c4dbcc   added OptFactory.h and
       new  5b7ed50   added and
       new  b706d7c   added UA and PA in
       new  57c6884   reclass function in and
       new  f1c59c7   string map in pkclassify_nn.c and
       new  a2ec861   small changes in pkinfo, see Changelog
       new  843bdf7   before doxygen
       new  061a710   added doxygen config file
       new  e93a838   see Changelog
       new  b24ea2d   changed help info in OptionPk to Markdown format
       new  e287c40   doxygen help format in Optionpk.h, example for, 
other apps to be done
       new  46acc25   support of polygons in ImgReaderOgr::readData and in 
       new  48453a5   converted all apps for new Optionpk.h
       new  b84ea71   error in pkclassify_svm when aggregation_opt is 0
       new  0c227ed   minor changes to pkclassify_svm, removed empty default 
string in
       new  2b73cf4   confusion matrix supports bagging for, 
balancing and bagsize for each class. Still to be implemented for
       new  6766a16 adapted for balancing and bagging 
similar to and added
       new  3d88882   added as main page for pktools via doxygen
       new  47a770e   doxygen adapted, todo: remove doubles in related pages
       new  75eb743   added doc
       new  599a713   added mainpage.dox and
       new  452fee1   added mainpage.dox, see Changelog
       new  f1ca6a3   explanation how to update repository home page in
       new  da3164c   before weekend
       new  c4cde92   worked on documentation in petit Paris
       new  3a77ea3   worked on documentation in petit Paris
       new  400f7f3   pkinfo all visible help info
       new  ea38ebf   added active learning functionality in
       new  c39706e   set probability svm to true when active learning is 
       new  76cdaaf   removed debug info from pkeditogr
       new  b102157   small change in
       new  29f0ca8   removed reclassification from, still 
todo for
       new  143c64c   introduced FileReaderAscii.h and updated
       new  46d99ce   renamed Histogram to StatFactory
       new  2bd32b7   spectral filtering
       new  9f33ca7   Filter1d and Filter2d with getFilterType returning enum 
FILTER_TYPE in function of string
       new  0c71d6d   re-implemented reclassification in 
still todo for
       new  5ada2b8   moved SensorModel.h from algorithms to models and 
introduced Prospect model
       new  a73f545   Merge branch 'master' of
       new  2eb7dfe   added libraries for prospect
       new  f189b48   adapted models/ for local libf95.a
       new  fa5dc56 supports fwhm and srf filtering
       new  185b485   error in classValueMap when class name and value option 
not provided
       new  800cb16   added logo, self sufficient prospect model
       new  4431941   adapted logo
       new  b1f3b5b   support priorm imagein (prepare for 
Markov Random Field)
       new  74d7dce   added missing files for prospect and pk[gs]chandelier
       new  3e90e4f   added Markov Random Field to and
       new  5f42ee9   debug mrf
       new  cda075d   removed configure, and some other object 
files from repository
       new  d37f521   filter and pkclassify_svm at work
       new  dff3410   moved non templated functions to newly created 
FileReaderAscii.c and added new functionality
       new  72cb037   wrong throw case in FileReaderAscii.h
       new  aaceeb0   call by reference in applySrf
       new  2d275ae   adapted mrf in after personal communication 
with Guy Thoonen
       new  88aac76   corrected mrf in
       new  d99010f   Filter.h: changed boundary for applyFwhm
       new  be9e0b1   use mask value itself for flag in
       new  75f3769   FileReaderAscii.h: support scale and offset in readData
       new  71030da   pkclassif_svm, pkopt_svm and pkfs_svm all identical for 
class and reclass
       new  cd9c581   FeatureSelector.h: introduced epsilon to exclude rat race 
in sffs
       new  6fcc62f   FeatureSelector.h: introduced epsilon to exclude rat race 
in sffs
       new  0e30c6c   pkclassify_nn and pkfs_nn adapted for classvaluemap and 
independent test set similar to svm
       new  a202e86   added Savannah to mainpage.dox
       new  8f31330   added examples and faqs for apps
       new  697d4ed   corrected include SensorModel.h in 
models and not in algorithms
       new  4a36532 bring result to scale [0:1]
       new  9dba6dd bring result to scale [0:1]
       new  8e25ca9   removed dependency of gslwrap: replaced gslwrap with 
armadillo in SensorModel.h and pksensormodel, replaced gslwrap with stl::vector 
and Vector2d
       new  b2c9b2e   geotransfer problem solved in pkfilter, directional 
morphology improved in Filter2d
       new  32d361f   Changelog update
       new  c43a0b4   some small corrections in Makefiles and defined static 
member variable in
       new  52caa5a   support negative weights in pkmosaic
       new  a9cdfae   comment in how to change fields with ogr2ogr 
using -sql option
       new  2dbf1cc   added step for GRID search in pkopt_svm
       new  b313bfc   pkeditogr stringent option for selecting features
       new  7872221   removed vito related code from master
       new  48babce   created separate directory lasclasses for liblasClasses
       new  555ac68 conditional Makefile for las
       new  11faf15 with conditional build for lasclasses
       new  3bc4208   string option for
       new  54ee080   sorting classes numerically in confusion matrix
       new  a4ac3e7   pkextract assert class_opt can be empty when extracting 
ogr vector sample
       new  6cd9a7d   variance should be var in pkfilter, include for gdal 
without path in Optionpk.h
       new  d53a463   adapted string options in svm related tools
       new  52dda11   default option -pe true and not visible in svm tools
       new  e088388   added and
       new  f659640   added support for discrete wavelet transform in filters
       new  4bc0a24   added pkenhance
       new  cd9f227   added logo.png
       new  192d302   Merge branch 'master' of
       new  48067af   version 2.4.1
       new  0434833 and added ohloh in Mainpage.dox
       new  035120e   priors in classification of vector files
       new  1b67952   bug fix in pktools for -min and -max
       new  18957a3   support scramble and shift in pkfilter clean up of using 
namespace std in header files
       new  1f5545d   added faq_pksetmask.dox with question from Giuseppe on 
       new  5af0025   corrected errors in FileReaderAscii
       new  13d3ec4   include path lasclasses for FileReaderLas.h
       new  bc8d00e   include path lasclasses
       new  ac1721f   Merge branch 'master' of
       new  d966574   corrected min max for pkinfo -hist, thanks to Giuseppe 
for noticing
       new  bdcf5f8   Merge branch 'master' of
       new  6321cde   support for even kernel size in Filter2d
       new  e2f5e95   getminmax before calc histogram in
       new  83590bf   pkfillnodata: changed default value for max distance from 
3 to 0 (infinity)
       new  8c5dd47   central wavelength SRF in Filter.h
       new  67e2c11   moved to
       new  d70b7bb   removed extra space in output of min in
       new  bde25e6   cv_opt must be above 1
       new  6fd42fa   introduced line features in Filter2d and pkfilter
       new  d5c90b1   floating point for accuracy in
       new  37ba184   Merge branch 'master' of
       new  ac16aca   update Changelog vito
       new  af5f2ca   Merge branch 'master' of
       new  fab9ca5   replace projection option by a_srs
       new  57d9b5d   --projection to -a_srs in pkinfo result
       new  3f107c4   retain color table after pksieve
       new  f66b880   replaced empty string with empty vector in options
       new  b363459   replaced empty string with empty vector in options
       new  c429f1b   centre->center in help info
       new  6fd4742   version 2.4.3 with nodata values
       new  89af987   changed option mr (mosaic rule) to cr (composit rule) in 
pkmosaic and removed valid rule (should be same as overwrite)
       new  a0290f1   update examples in doc
       new  f37cf7a   Merge branch 'master' of
       new  e8d8bb5   changed examples in doc and some msknodata options
       new  beee152   Merge branch 'master' of
       new  c21d18e   bug for output file in pklas2img
       new  ce69ad4   hide some options in pkdiff
       new  e41b72b   Merge branch 'master' of
       new  0ae2e58   pkfilter 2d wavelet forward and inverse, pkinfo hist when 
       new  3ee7575   worked on pkfilter, changed some filter name to 
       new  17fe2c8   redesign of geotransform in ImgReaderGdal and 
       new  bc2a48f   version 2.5
       new  f9b3863   DWT in pkfilter automatically in spectral domain if dz>0
       new  abfc644   verbose information for dwt in spectgral domain
       new  48f0d42   moved readDataImageShape to ImgReaderOgr.h
       new  d10f221   check of mandatory options are present
       new  1722a5d   support of ogr formats in apps with ogr writer
       new  7d058c2   adfgeotransform gt[5]=-dy in pkcrop and pkmosaic
       new  e25b014   support for non shape files extended, problem in pkdiff 
when output is defined remains...
       new  1b76c5e   fixed pkedit output for non shape OGR files
       new  a495db3   support multiple layers in pkdiff and pkextract
       new  b3cabcc   support multi layers in ImgReaderOgr::readDataImageShape 
(for pkclassify_svm and pkclassify_nn)
       new  8f2c83b   redundant ilayer loop in readDataImageShape in
       new  3bb951b   added footer for Google analytics
       new  ebcfefd   setGeoTransform in pklas2img and pkascii2img must have 
negative dy
       new  f28a04b   Filter2d.h: bug in m_nodata and pklas2img: did not take 
into account hthreshold in iteration
       new  d8e4b7c   geotransform should be correct for both projected and 
not-projected raster images. removed dependence of isGeoRef() in applications
       new  b35ec98   moved post filter from pklas2img to pkfilterdem
       new  033dfe0   hist in StatFactory
       new  df97b5a   coding in Enschede, down in pkfilter
       new  9ede8a0   pkcrop corrected bounding box in case of user defined dx 
dy, support crop for non-georeferenced i mages
       new  c8c54d4   added comment on md5 checksum on main page
       new  d7dd46b   pkinfo hist bin for integers
       new  1dd2184   support median filter in pkextract
       new  e51f342 minor
       new  ce605c4   Merge branch 'master' of
       new  3682d1f   retain nodata in pksieve when mask is set
       new  3d78193   error in hist in StatFactory
       new  045da7b   porting to windows, solving compilation issues with 
Visual Studio, added for template specialization
       new  6328ba7   porting to windows from linux
       new  701e2c7   porting to windows via Visual Studio 2010 Express using 
git for windows
       new  d7d7f6f   merged win to linux, commit from linux
       new  97a2800   commit from branch
       new  6c544e7   removed
       new  0dcb7b5   commit from pktools
       new  3615190   Merge branch 'master' of
       new  3313a50   Ignore *.user
       new  11d0102   from windows
       new  709bfa5   from linux
       new  2cb6ece   Merge branch 'master' of
       new  af8b83d   from home before merge
       new  59a3647   Merge branch 'master' of
       new  e78dab7   value in percentiles in StatFactory based on maximum 
instead of median
       new  8ba643e   change include path in installation according to comments 
of Francesco P. Lovergine
       new  44d7cb9   version 2.5.2 with library version control
       new  0d6b6ea   fine tuning on distro
       new  b572943   working on qt for SVM classifier
       new  62ab576   Merge branch 'master' of
       new  d2b6d07   config.h now in /usr/local/lib/pktools/include
       new  ff7c493 ;max->mymax in StatFactory
       new  3e8e2e0   Merge branch 'master' of
       new  22691c3   add, renamed pkcomposit to pkcomposite
       new  655c125   support layer name in read training data in ogr
       new  009288c   support of layer names
       new  2861fdc   added dox for pkcomposite and pksvm
       new  6e98999   Merge branch 'master' of
       new  28599c1   debug ilayer in ogrWriter, copyFields should have two 
layers: one for read, one for write
       new  97a33c8   Merge branch 'master' of
       new  cc0305e   Merge branch 'master' of
       new  85f5c0c   added pksvm_gui
       new  b74e648   added pkextract_gui
       new  5099115   clear input and output console at begin of run
       new  b089219   clear input and output console at begin of run in
       new  4bdc64e   resize pkextract.ui, still need t include layouts...
       new  8dfb907   layout for pkextract_gui
       new  83c529b   layout for pksvm_gui
       new  c1e05a3   added pkcomposite_gui
       new  9ca9ffa   combo boxes and input list in
       new  05e5ada   resample option in pkcomposite similar to pkcrop
       new  872927f   empty combobox means default in pkcomposite_gui
       new  e017ce9   added pkcrop_gui
       new  ab81977   added band list in pkcrop_gui
       new  35da728   input bands in pkcrop_gui
       new  9b0939c   pkdiff copyFields with dst layer
       new  435b30e   working on gui
       new  ba8a6e1   balance in pksvm_gui
       new  4ee6d97   tool tips in qt
       new  3fa8c1b   update new utility names in comments in headers
       new  f914d1f gdal>=1.10.0
       new  94c4eef   support laz files in pklas2img
       new  82154ae   Merge branch 'master' of
       new  da076f8   info in Doxyfile
       new  703d132   Merge branch 'master' of
       new  2dc8acd   removed options in pklas2img
       new  870076d   pkcrop-gui band selection
       new  ec47f35   delete bands and inputs in pkcomposite_gui and pkcrop_gui
       new  64a98bf   gui: clear input/output when reset defaults
       new  6aa8e82   added polygon threshold for pkextract
       new  a636f83   Merge branch 'master' of
       new  e32a255   cleaned pkextract with added functionality, vito dsm2dtm
       new  5494440   implementing vito dsm2dtm
       new  7bb1b49   long options pkinfo and worked on dsm2dtm vito
       new  2a8ca00   qt: added rules for pkextract and changed defaults for 
cost and gamma in pksvm
       new  076ab5d   working on dsm2dtm in Filter2d.h, error for south to 
       new  f07f399   added pkdiff_gui, not tested
       new  7cefa57   check boundaries for imgreadergdal
       new  7f33639   pkextract_gui default sample
       new  80f68b7   fixed conflict
       new  1a6c2ac   no need for if(geo) in geo2img in
       new  d0b39e8   cap boundary of polygon enveloppe when reading datablock 
       new  bf7f1a5   cap both ul and lr pixel when reading block in pkextract
       new  5ee1786   pkextract_gui added single threshold
       new  15f832e   removed support for masking in pkexract, introduced 
srcnodata and bndnodata
       new  cf47773   changed kde type to bool and rely on Silvernman's rule of 
thumb in pkstatogr and pkstatascii
       new  63d89ad   simplify options for pksvm
       new  88204b8   default SQLite in pkdiff
       new  32295b2   debug: write centroid instead of polgon feature for 
maxvote in case polygon_opt is false
       new  45666d9   pkdiff with layer names
       new  87ea4a1   qt gui, nodata pkdiff_gui
       new  f32012f   new method countid for Giuseppe in and 
       new  d8c4396   ConfusionMatix: must find exact match in getClassIndex, 
pkfssvm and pkfsann: confusion matrix global for class names
       new  3a5b4d8   working on pkfssvm, label names via global 
ConfusionMatrix seems not to work
       new  60cd665   working on feature selection. todo: create class and pass 
instead of function
       new  20239ac   fixed conflict in, stil need to replace 
getCost function with class
       new  48b1600   changed option from rb to cb in pkcomposite
       new  fe15938   Merge branch 'master' of
       new  ae409f9   added autoreconf -i to INSTALL
       new  09265f1   added
       new  ea06516   added class ImgRegression
       new  0ae6a8f   drafted, not tested
       new  741c801   first working version
       new  8f2e83e   implemented both forward and backward kalman filter
       new  f430fc3   implemented smoothing kalman filter
       new  9d9621c   redesigned forward kalman filter, todo: backward
       new  7336b2b   debugged forward and backward
       new  179fdf2   added support for uncertainty as second band in 
observation image for
       new  d91154e   pkkalman, back from the states
       new  fb26c6f   pkkalman with uncertainty band in observation input
       new  a9fa501   working on pkfssvm, linker error
       new  33fcc41   added CostFactory.h
       new  5177b23   working on pkfssvm, linking, but not correctly working
       new  d1c6d3d   implemented pkfsann with ConfusionMatrix as in pkfssvm 
(not tested yet)
       new  c601fc8   segmentation fault in
       new  8fd9b88   worked on pkkalman, supporting different spatial 
resolutions for model and observation
       new  5ccde20   added pkfssvm.h and pkfsann.h
       new  f113dc3   support for nodata in model
       new  ac27baa   in pkfsann should be in bin_PROGRAMS only if 
       new  e443eb9   added visual studio files
       new  6ee9910   made CostFactory::getCost a pure virtual function
       new  ecf8a70   conflict resolved in CostFactory.h
       new  88a46e8   added vis_studio specific .gitignore
       new  3444cb6   changes in help info while reviewing pktools in book
       new  8881511   bug in pkkalman (irow->modRow)
       new  256af5d   git pushMerge branch 'master' of
       new  a29bbe4   support different bounding box in
       new  8744348   pkkalman
       new  7de3a2b   bug fix #42951 (liblas 1.8 support)
       new  296a297   Fix build failure on ARM due to va_list usage in 
       new  74a1aeb   help info in pkcomposite
       new  58ca050   pkfssvm and pktoptsvm update, make use of CostFactory 
       new  f7d3dcb   added CostFactorySVM
       new  2142c8c   documentation and pkcrop_gui error message
       new  1f4825e   merge after conflict in pkcrop_gui
       new  3aa3523   support multiple bands for statistics in pkinfo
       new  49e1907   Merge branch 'master' of
       new  f42a103   explicit libgsl in src/apps/
       new  b9007e5   small changes
       new  1d70ad1   Merge branch 'master' of
       new  232189d   trying overwrite in createLayer in
       new  5c7bb1f   pkkalman bug: upsample coarse res image if no observation 
at initial time
       new  872e3f2   working on filter in spectral domain
       new  0df665d   working on filter in spectral domain
       new  90bff0e   working on filter in spectral domain
       new  ce13328   fixed bug in for proportion rule
       new  aec126e   corrected 1d filter of dimz>1 in in plane
       new  243d1ba   ImgWriterOgr: always overwrite
       new  a818dd0   pkextract support statistics and polygon output for point 
sample vector datasets
       new  6d40766   increased so version
       new  4247b6a   increased base version
       new  3386276   changelog for ImgWriterOgr overwrite
       new  8fc7db8   buffer for points in pkextract
       new  a13363f   working on pkextract with random sample generation
       new  39dce7f   support for simple random and systematic grid
       new  531de4f   removed assert in
       new  15b59bd   replaced options start and end with bstart and bend in 
pksvm and pkann
       new  629acee   filebuffer for ndvi in pkcomposite
       new  b6bcd1a   Merge branch 'master' of
       new  55c8d93   sensor regression based on model data input
       new  e688014   worked on pkkalman
       new  82621ff   update of Changelog
       new  c8a3bd2   Merge branch 'master' of
       new  477d996   fixed bug #43500, Unsigned 16-bit tifs with pkfilter
       new  3a70b0f   working on documentation
       new  bb06109   Merge branch 'master' of
       new  046b4cb   added examples usages for documentation
       new  6d4f58d   added examples_pkdumpimg.dox
       new  acf164c   Merge branch 'master' of
       new  bc172d6   working on documentation, still need to (re-)do the full 
       new  67c9950   added descriptions for utilities
       new  8e882ce   links on home page
       new  e97c508   worked on descriptions in documentation
       new  5ab1dc0   worked on descriptions in documentation
       new  0358543   added installation script
       new  3fea73e   options in installer
       new  aab3625   solved problem for liblas in installer
       new  5db6d79   switched back from -bs and -be to -s and -e in svm and ann
       new  9498cf2   documentation for start and end bands in svm and ann
       new  a91f519   libbase has no src files
       new  eb864ed   ref option in pkegcs
       new  de87e5f   worked on descriptions
       new  f11cf50   completed descriptions
       new  a7082f9 minimum GDAL version is 1.10
       new  3d45c49   install script requires GDAL>=1.10
       new  954843e   nodata values for spectral/temporal filtering
       new  7c06b8d
       new  4b602f1   Merge branch 'master' of
       new  9058708   debug pkextract: first SetGeometry, then SetFrom
       new  54aebed   exceptions in pkextract
       new  424a7b6   working on geo mask in pksvm
       new  da5d9b7   mask in geo coordinates for pksvm and pkann
       new  2c6c02f   pkextract: removed redundancy in SetFrom and SetGeometry, 
pkkalman: introduced negative deltaObs
       new  3463b66   replaced array with vector in myfann_cpp.h for visual 
studio compiler
       new  36cdcc9   Merge branch 'master' of 
Merge after edit in myfann_cpp.h in Windows

The 375 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
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