Hi,
We have been using snort for quit a long time for our work, its good IDS but since it works on signature, u need to update and maintain your signatures files for optimum performance (drawback). If you are aware of false positive, true negative issues then u wud understand this more clearly.


Also if anybody knows Linux based Opensource IPS(Intrusion Prevention
System) ...



iptables ?

About iptables it is just a packet filtering firewall and would not do any intrusion detection or prevention, its' just going to log, drop or accept packets depending upon your network policies. You have a tool called "firestarter" available on www.sourceforge.net which can be used even by novice for configuring iptable firewall.

As far as i know u can use iptable and snort comination for a good network defence in linux. Iptable can be used on the router or on the gateway and snort can be fixed inside the network after iptable.

--
Gautam Pagedar
Centre for information and Network Security.
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