Galen's suggestion to use Octave has supplied me with a good solution.

Octave is able to read in an gray scale jpg file, store it in a matrix, 
then perform either a fft() or inverse fft() on the matrix.
After getting hit with a warning message about trying to display a image 
matrix with complex numbers, I did successfully view a 
image(real(matrix)) and save it as a ppm file.

Gimp was then able to convert the ppm format to the standard jpg or png, 
so I am satisfied.


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