On 2018/12/21 13:23, Ingo Feinerer wrote:
> Dear useRs,
> 
> update math/R 3.5.1 -> 3.5.2
> 
> - Bump SO_VERSION minor as check_sym
>   (/usr/src/lib/check_sym libR.so.34.1 libR.so.34.2) reports:
> 
>   No dynamic export changes
>   External reference changes:
>   added:
>           fstat
>           pthread_equal
>           pthread_kill
>           pthread_self
> 
>   I am not sure it is strictly necessary here but it does not hurt.
> 
> - Removed "curses fribidi" from WANTLIB as "make port-lib-depends-check"
>   reports them as extra. There are still
> 
>   R-3.5.2(math/R):
>   Extra:  c++.2 c++abi.0
> 
>   but I think these should not be removed?
> 
> - The `tan(1+1000i)` test still fails (see
>   https://marc.info/?l=openbsd-tech&m=150737856618497&w=2).

Build failed on i386:

....
in method for 'coerce' with signature '"graphNEL","CsparseMatrix"': no 
definition for class "graphNEL"
in method for 'coerce' with signature '"graphNEL","TsparseMatrix"': no 
definition for class "graphNEL"
in method for 'coerce' with signature '"sparseMatrix","graph"': no definition 
for class "graph"
in method for 'coerce' with signature '"sparseMatrix","graphNEL"': no 
definition for class "graphNEL"
in method for 'coerce' with signature '"TsparseMatrix","graphNEL"': no 
definition for class "graphNEL"
Creating a generic function for 'qr.R' from package 'base' in package 'Matrix'
Creating a generic function for 'qr.Q' from package 'base' in package 'Matrix'
Creating a generic function for 'qr.qy' from package 'base' in package 'Matrix'
Creating a generic function for 'qr.qty' from package 'base' in package 'Matrix'
Creating a generic function for 'qr.coef' from package 'base' in package 
'Matrix'
Creating a generic function for 'qr.resid' from package 'base' in package 
'Matrix'
Creating a generic function for 'qr.fitted' from package 'base' in package 
'Matrix'
Creating a generic function for 'toeplitz' from package 'stats' in package 
'Matrix'
** help
No man pages found in package  'Matrix' 
Error in .get_package_metadata(dir, FALSE) : 
  Files 'DESCRIPTION' and 'DESCRIPTION.in' are missing.
ERROR: installing Rd objects failed for package 'Matrix'
* removing '/usr/obj/ports/R-3.5.2/build-i386/library/Matrix'
gmake[2]: Leaving directory 
'/usr/obj/ports/R-3.5.2/build-i386/src/library/Recommended'
gmake[1]: Leaving directory 
'/usr/obj/ports/R-3.5.2/build-i386/src/library/Recommended'
===> Exiting math/R with an error
gmake[2]: *** [Makefile:53: Matrix.ts] Error 1
gmake[1]: *** [Makefile:39: recommended-packages] Error 2
gmake: *** [Makefile:77: stamp-recommended] Error 2
*** Error 2 in math/R (/usr/ports/infrastructure/mk/bsd.port.mk:2786 
'/usr/obj/ports/R-3.5.2/build-i386/.build_done')

Full log attached.


Attachment: R.log.gz
Description: application/gunzip

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