On 2018/12/27 15:02, Ingo Feinerer wrote: > On Tue, Dec 25, 2018 at 11:52:01PM +0000, Stuart Henderson wrote: > > Build failed on i386: > > > > .... > > in method for 'coerce' with signature '"graphNEL","CsparseMatrix"': no > > definition for class "graphNEL" > > in method for 'coerce' with signature '"graphNEL","TsparseMatrix"': no > > definition for class "graphNEL" > > in method for 'coerce' with signature '"sparseMatrix","graph"': no > > definition for class "graph" > > in method for 'coerce' with signature '"sparseMatrix","graphNEL"': no > > definition for class "graphNEL" > > in method for 'coerce' with signature '"TsparseMatrix","graphNEL"': no > > definition for class "graphNEL" > > Creating a generic function for 'qr.R' from package 'base' in package > > 'Matrix' > > Creating a generic function for 'qr.Q' from package 'base' in package > > 'Matrix' > > Creating a generic function for 'qr.qy' from package 'base' in package > > 'Matrix' > > Creating a generic function for 'qr.qty' from package 'base' in package > > 'Matrix' > > Creating a generic function for 'qr.coef' from package 'base' in package > > 'Matrix' > > Creating a generic function for 'qr.resid' from package 'base' in package > > 'Matrix' > > Creating a generic function for 'qr.fitted' from package 'base' in package > > 'Matrix' > > Creating a generic function for 'toeplitz' from package 'stats' in package > > 'Matrix' > > ** help > > No man pages found in package 'Matrix' > > Error in .get_package_metadata(dir, FALSE) : > > Files 'DESCRIPTION' and 'DESCRIPTION.in' are missing. > > ERROR: installing Rd objects failed for package 'Matrix' > > * removing '/usr/obj/ports/R-3.5.2/build-i386/library/Matrix' > > gmake[2]: Leaving directory > > '/usr/obj/ports/R-3.5.2/build-i386/src/library/Recommended' > > gmake[1]: Leaving directory > > '/usr/obj/ports/R-3.5.2/build-i386/src/library/Recommended' > > ===> Exiting math/R with an error > > gmake[2]: *** [Makefile:53: Matrix.ts] Error 1 > > gmake[1]: *** [Makefile:39: recommended-packages] Error 2 > > gmake: *** [Makefile:77: stamp-recommended] Error 2 > > *** Error 2 in math/R (/usr/ports/infrastructure/mk/bsd.port.mk:2786 > > '/usr/obj/ports/R-3.5.2/build-i386/.build_done') > > I cannot reproduce this > (tested with a current i386 snapshot in vmm: > $ sysctl kern.version > kern.version=OpenBSD 6.4-current (GENERIC) #1078: Mon Dec 24 22:34:36 MST 2018 > [email protected]:/usr/src/sys/arch/i386/compile/GENERIC > ) > > > ... > > Creating a generic function for 'qr.resid' from package 'base' in package > > 'Matrix' > > Creating a generic function for 'qr.fitted' from package 'base' in package > > 'Matrix' > > Creating a generic function for 'toeplitz' from package 'stats' in package > > 'Matrix' > > ** help > > *** installing help indices > > ** building package indices > > Loading required package: Matrix > > ** installing vignettes > > ** testing if installed package can be loaded > > * DONE (Matrix) > > Maybe lacking free space or another problem when extracting the Matrix > .tar.gz on the build machine?
There is plenty of space on the relevant partition. And unless it's doing something weird, a failure in the Makefile command extracting the file would normally cause make to exit with an error. Also it says "** package 'Matrix' successfully unpacked and MD5 sums checked" in the log :-) Maybe there will be a clue if you diff my log against yours from a successful build and see what's different?
