afs commented on code in PR #3966:
URL: https://github.com/apache/jena/pull/3966#discussion_r3367466336


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THREAT_MODEL.md:
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+
+# Apache Jena — Threat Model (v0 draft)
+
+## §1 Header
+
+- **Project:** Apache Jena (`apache/jena`), `main`, against which this draft 
was written. A monorepo: the RDF/SPARQL Java framework (`jena-core`, 
`jena-arq`, `jena-base`, RIOT parsers, `jena-tdb1`/`jena-tdb2` stores, 
SHACL/ShEx, GeoSPARQL, text index) **and** the Fuseki HTTP server 
(`jena-fuseki2`).
+- **Date:** 2026-06-02. **Status:** draft — for Apache Jena PMC review. 
**Author:** ASF Security team (drafted via the Scovetta threat-model rubric), 
for PMC ratification.
+- **Version binding:** versioned with the project; a report against version 
*N* is triaged against the model as it stood at *N*.
+- **Reporting cross-reference:** §8-property violations → report privately per 
ASF process (`[email protected]` → `[email protected]`); §3/§9 findings 
are closed citing this document.
+- **Provenance legend:** *(documented)* = Jena's own docs/repo; *(maintainer)* 
= confirmed by a Jena PMC member through this process (andy@ has ratified 
destination + the help-with-model request); *(inferred)* = reasoned from 
architecture, not yet confirmed — each has a matching §14 open question.
+- **Draft confidence:** ~12 documented / ~2 maintainer / ~34 inferred.
+- **What Jena is:** Apache Jena is a Java framework for building Semantic-Web 
/ linked-data applications over RDF. It provides an in-process API to RDF data 
held in memory or in a native store (TDB), the ARQ SPARQL query/update engine, 
RIOT parsers/serialisers for RDF syntaxes (Turtle, RDF/XML, JSON-LD, N-Triples, 
…), and **Fuseki** — a standalone HTTP server exposing SPARQL query, SPARQL 
Update, and the Graph Store Protocol over the network. *(documented — README, 
jena.apache.org; maintainer — andy@ 2026-06-01: "an HTTP-based data server 
(Fuseki) and a Java API to RDF data stored in memory and in a custom database")*
+
+## §2 Scope and intended use
+
+- **Two deployment shapes** *(maintainer — andy@)*:
+  - **Fuseki** — a long-running **HTTP server** that answers SPARQL over the 
network. The primary network trust surface.
+  - **The Jena Java API** — `jena-core`/`jena-arq`/TDB embedded **in-process** 
in another application. Trusted caller; the bytes/queries it feeds Jena are 
that application's responsibility.
+- **Caller roles** (Fuseki is a network service — the role splits):
+  - **anonymous SPARQL client** — issues SPARQL queries over HTTP. 
**Default-public for query** *(documented — Fuseki security docs: "SPARQL 
endpoints are open to the public but administrative functions are limited to 
localhost")*.
+  - **authenticated user / admin** — gated by Apache Shiro (`shiro.ini`); 
admin functions (`/$/*`) restricted to localhost by default *(documented)*.
+  - **operator/deployer** — configures Shiro, datasets, TDB location, and 
which endpoints are read-only vs updatable. **Trusted.** *(inferred)*
+  - **embedding application** (Java API) — trusted; supplies queries/RDF to 
the library. *(inferred)*
+
+**Component-family table** *(monorepo; in/out of model):*
+
+| Family | Entry point | Touches OS/network | In model? |
+| --- | --- | --- | --- |
+| Fuseki HTTP server | `jena-fuseki2` — SPARQL query / Update / Graph Store 
Protocol, admin `/$/*` | network (listens) | **In — primary boundary** 
*(documented)* |
+| SPARQL engine (ARQ) | `jena-arq` — query/update eval, `SERVICE` federation, 
custom functions | network out (SERVICE), file (file: URLs) | **In — high 
value** *(inferred)* |
+| RDF I/O (RIOT) | `jena-arq`/`jena-core` parsers (RDF/XML, Turtle, JSON-LD, 
…) | parses untrusted RDF | **In — XXE / parser-DoS surface** *(inferred)* |
+| Stores | `jena-tdb1`, `jena-tdb2`, `jena-db` | filesystem | **In (engine's 
use); on-disk store is operator-trusted** *(inferred)* |
+| IRI / langtag | `jena-iri3986`, `jena-langtag`, `jena-base` | none | **In 
(input parsing)** *(inferred)* |
+| Validation / extensions | `jena-shacl`, `jena-shex`, `jena-geosparql`, 
`jena-text`, `jena-serviceenhancer` | text index; SERVICE | **In (reachable 
from queries)** *(inferred)* |
+| Client/API helpers | `jena-rdfconnection`, `jena-querybuilder`, 
`jena-rdfpatch`, `jena-commonsrdf`, `jena-ontapi` | none | **In as libraries 
(memory/correctness)** *(inferred)* |
+| CLI tools | `jena-cmds` | filesystem | **In iff fed untrusted input; usually 
operator-run** *(inferred)* |
+| Examples / tests / benchmarks | `jena-examples`, `jena-integration-tests`, 
`jena-benchmarks` | n/a | **Out** *(see §3)* |
+
+## §3 Out of scope (explicit non-goals)
+
+- **`jena-examples`, `jena-integration-tests`, `jena-benchmarks`** — 
illustrative/test, not production. *(inferred)*
+- **Attackers who control the host, the Fuseki config (`shiro.ini`, dataset 
config), the TDB data directory, or the embedding Java application.** 
Operator-trusted. *(inferred)*
+- **The embedding application's own use of the Java API** — if an app feeds 
attacker-controlled SPARQL it built by string-concatenation to ARQ, that 
injection is the app's bug, not Jena's (analogous to SQL injection in a JDBC 
caller). *(inferred)*
+- **Generic DoS / query-complexity exhaustion** beyond a to-be-confirmed line 
— Andy raised resource-volume as a concern; the §8 resource line + §14 frame 
it. *(inferred)*
+- **Confidentiality of RDF data at rest / TLS on the wire** — operator 
deployment (reverse proxy for TLS; filesystem perms for TDB). *(inferred)*
+
+## §4 Trust boundaries and data flow
+
+- **Primary boundary: the Fuseki SPARQL endpoint.** Queries arrive over HTTP 
from (by default) **anonymous** clients. The boundary question is what an 
anonymous/low-privilege SPARQL query can reach: read data it shouldn't, 
**write** (SPARQL Update / GSP) without authorisation, make Fuseki issue 
outbound requests (`SERVICE` → SSRF), read local files (`file:` URLs / FROM), 
execute code (ARQ custom/JavaScript functions if enabled), or exhaust 
resources. *(inferred; public-query default documented)*
+- **Admin boundary:** the `/$/*` admin surface is localhost-only by default 
*(documented)*; exposing it to the network is an operator misconfiguration.
+- **RDF-parse boundary:** any endpoint that **parses** caller-supplied RDF 
(Update bodies, GSP PUT/POST, content negotiation) runs RIOT on untrusted bytes 
— the XXE (RDF/XML) and parser-DoS surface. *(inferred)*
+- **Reachability preconditions:**
+  - A finding in ARQ/RIOT/stores is **in-model** iff reachable from a Fuseki 
request at the relevant role (default: anonymous query; authenticated for 
Update). *(inferred)*
+  - A finding reachable only through the **in-process Java API** with 
caller-supplied trusted input is `OUT-OF-MODEL: trusted-input` (the embedding 
app owns it). *(inferred)*
+  - A finding requiring operator config (`shiro.ini`, exposing admin, enabling 
JS functions) is `OUT-OF-MODEL: trusted-input` / `non-default-build`. 
*(inferred)*
+
+## §5 Assumptions about the environment
+
+- **Runtime:** JVM (Java; "old in places" per andy@). *(maintainer)*
+- **Fuseki auth:** Apache Shiro via `$FUSEKI_BASE/shiro.ini`; changing it 
needs a restart *(documented — Fuseki security docs)*.
+- **Store:** TDB1/TDB2 on the local filesystem, assumed private to the 
Fuseki/JVM process. *(inferred)*
+- **Network:** TLS is the deployer's (reverse proxy); Fuseki's bundled example 
setup is plaintext *(documented — "no TLS, passwords in plain text")*.
+- **Negative side-effects inventory** (inferred — wave-1/2 target): Fuseki 
listens on HTTP; ARQ can make **outbound** network requests via `SERVICE` 
(federation) and can read **`file:`/http: URLs** named in queries (FROM/FROM 
NAMED/SERVICE); RIOT parses untrusted RDF; ARQ may execute **custom/JavaScript 
functions** if the operator enabled them; TDB reads/writes the data directory. 
*(inferred — these are the load-bearing confirmations)*
+
+## §5a Build-time and configuration variants
+
+Security-relevant configuration *(Fuseki auth documented; the rest inferred — 
confirm defaults):*
+
+| Knob | Default | Effect / stance |
+| --- | --- | --- |
+| Fuseki Shiro auth (`shiro.ini`) | SPARQL **query** public; admin `/$/*` 
**localhost-only** | *(documented)* Restricting query access requires Shiro 
`[urls]` ACLs. |
+| Fuseki example user setup | `admin`/`pw`, plaintext, no TLS | *(documented)* 
explicitly "not recommended for production". Any "default admin/pw in prod" 
report → `OUT-OF-MODEL: non-default-build`. |
+| SPARQL **Update** / Graph Store write | per-dataset (read-only vs read-write 
service) — **default to confirm** | *(inferred)* If a dataset ships 
update-enabled + unauthenticated, anonymous write is in-model; if read-only by 
default, anonymous write is not reachable. **Wave-1 question.** |
+| `SERVICE` (federated query) | **to confirm** (enabled? restrictable 
allow-list?) | *(inferred)* SSRF surface; whether it can be disabled / 
allow-listed is the key §10 lever. |
+| ARQ **JavaScript / custom functions** | **to confirm** (opt-in?) | 
*(inferred)* If enabled, SPARQL can execute code → 
by-design-if-operator-enabled, like a trusted extension. |
+| RDF/XML & external-entity handling in RIOT | **to confirm** (XXE off by 
default?) | *(inferred)* Whether external entities / `file:` access are 
disabled by default in the parsers. |
+| Query timeout / result limits | **to confirm** | *(inferred)* the 
resource/DoS lever (Andy's concern). |
+
+## §6 Assumptions about inputs
+
+Per-surface trust table *(Fuseki defaults documented; the rest inferred):*
+
+| Surface | Input | Attacker-controllable? | Caller/operator must enforce |
+| --- | --- | --- | --- |
+| Fuseki SPARQL query endpoint | SPARQL query text | **yes (anonymous by 
default)** | Shiro ACLs if data is sensitive; SERVICE/file/JS-function 
restrictions; query timeout |
+| Fuseki SPARQL Update / GSP | update text / RDF body | **yes — must be 
authorised** | read-only-by-default or Shiro-gated write; RDF parse hardening |
+| RDF parse (RIOT) anywhere | RDF/XML, Turtle, JSON-LD, … | **yes** | 
external-entity (XXE) off; bounded nesting/size |
+| `SERVICE <url>` in a query | target URL | **yes** | SSRF egress controls / 
allow-list |
+| `FROM` / `FROM NAMED` / `file:` URI | dataset URI | **yes** | block `file:` 
and arbitrary fetch from untrusted queries |
+| Fuseki admin `/$/*` | dataset mgmt, backups | **must not be on the public 
net** | localhost-only (default) / operator network |
+| Java API (`QueryExecution`, `Model.read`) | query / RDF from the app | no — 
the embedding app's trust | app validates its own untrusted inputs |
+
+- **Size/shape/rate:** query-cost / result-size / parser-nesting bounds — to 
confirm (Andy's volume concern); §8 resource line. *(inferred)*
+
+## §7 Adversary model
+
+- **Anonymous SPARQL client (primary)** — can reach Fuseki's public query 
endpoint; goals: read non-public graphs, write via an exposed Update endpoint, 
SSRF via `SERVICE`, local-file read via `file:`/FROM, code execution via JS 
functions (if enabled), resource exhaustion via expensive queries. *(inferred; 
public-query default documented)*
+- **Authenticated low-privilege user** — bounded by Shiro/dataset ACLs; goal: 
exceed them. *(inferred)*
+- **Crafted-RDF attacker** — supplies malicious RDF (RDF/XML XXE, 
deeply-nested/oversized documents) to any parse path. *(inferred)*
+- **Out of scope:** operator/host control; the embedding app supplying its own 
trusted input; anyone who can edit `shiro.ini` or enable JS functions. 
*(inferred)*
+
+## §8 Security properties the project provides
+
+*(All inferred pending PMC confirmation except where Fuseki defaults are 
documented.)*
+
+- **Admin surface is localhost-bound by default.** Fuseki's `/$/*` admin 
functions are not reachable from the network unless the operator exposes them. 
*Violation symptom:* an admin function reachable anonymously over the network 
in the default config. *Severity:* CVE-class. *(documented — Fuseki security 
docs)*
+- **Shiro access control is enforced when configured.** A Shiro `[urls]` ACL 
restricting an endpoint cannot be bypassed by request manipulation. *Violation 
symptom:* a restricted endpoint reached without satisfying its Shiro rule. 
*Severity:* CVE-class. *(inferred)*
+- **SPARQL queries cannot escape the dataset's authorised scope.** An 
anonymous/low-priv query cannot read graphs, write data, reach the filesystem, 
or make Fuseki act as an SSRF proxy beyond what the dataset config permits. 
*Violation symptom:* SERVICE-SSRF, `file:` read, cross-graph read, or 
unauthorised write from an in-scope query. *Severity:* CVE-class. *(inferred — 
the core boundary to ratify; these are the classic Jena CVE classes)*
+- **RDF parsing is safe against untrusted documents.** RIOT parsing of 
attacker RDF does not resolve external entities (XXE), execute code, or 
recurse/allocate unboundedly. *Violation symptom:* XXE, SSRF, or DoS from a 
parsed RDF document. *Severity:* CVE-class. *(inferred)*
+- **Resource bounds — UNSPECIFIED.** Whether an expensive SPARQL query (Andy's 
volume concern) or a large RDF body is a bug or an operator-tuned limit (query 
timeout) is open. *(inferred)*
+
+## §9 Security properties the project does *not* provide
+
+- **No protection if the operator exposes the admin surface, ships the example 
`admin`/`pw` setup, or runs without TLS** — deployment hardening (pending §5a 
rulings). *(documented that the example setup is not for production)*
+- **No defense when ARQ JavaScript/custom functions are enabled on an 
untrusted endpoint** — enabling code-executing functions and exposing them to 
anonymous queries is operator-chosen code execution (by-design, like a trusted 
extension), pending confirmation. *(inferred)* **False friend:** a SPARQL 
endpoint being "read-only" does not by itself prevent SSRF (`SERVICE`) or 
local-file read (`file:`) unless those are separately restricted.
+- **No SPARQL-injection defense for the embedding application** — an app that 
concatenates untrusted input into a query string owns that bug (use 
parameterised queries / `QueryBuilder`). *(inferred)*
+- **No transport security / authentication unless the operator configures 
Shiro + TLS.** *(documented/inferred)*
+- **No generic-DoS / query-complexity guarantee** beyond a to-be-stated line. 
*(inferred)*
+- **Well-known classes left to the caller/operator:** SSRF via `SERVICE`, 
local-file disclosure via `file:`/FROM, XXE in RDF/XML, SPARQL injection 
(embedding app), and algorithmic-complexity DoS via crafted queries. *(inferred 
— Jena's published CVE history clusters here; confirm in §14)*
+
+## §10 Downstream responsibilities (operator/deployer)
+
+- **Put Fuseki behind auth (Shiro) + TLS** before exposing sensitive data; 
never ship the example `admin`/`pw` setup to production. *(documented)*
+- **Keep the admin `/$/*` surface localhost-only / operator-network.** 
*(documented)*
+- **Make datasets read-only unless write is intended**, and gate SPARQL Update 
/ GSP behind Shiro. *(inferred)*
+- **Restrict or disable `SERVICE` federation and `file:` access** on endpoints 
reachable by untrusted clients (SSRF / local-file). *(inferred)*
+- **Do not enable ARQ JavaScript/custom functions on untrusted endpoints.** 
*(inferred)*
+- **Set query timeouts / result-size limits** appropriate to capacity (the 
volume lever). *(inferred)*
+- **Use parameterised queries** (`QueryBuilder`/parameterised 
`QueryExecution`) in embedding apps; never string-concatenate untrusted input 
into SPARQL. *(inferred)*
+
+## §11 Known misuse patterns
+
+*(Draft one-liners — expand before publishing.)*
+
+- Exposing a public, update-enabled SPARQL endpoint with no auth. *(inferred)*
+- Leaving `SERVICE`/`file:` reachable from anonymous queries (SSRF / file 
read). *(inferred)*
+- Enabling ARQ JS functions on a public endpoint. *(inferred)*
+- Shipping the example `admin`/`pw` / no-TLS Fuseki setup to production. 
*(documented as not-for-prod)*
+- Building SPARQL by concatenating untrusted strings in an embedding app. 
*(inferred)*
+- Parsing untrusted RDF/XML without external-entity protections. *(inferred)*
+
+## §11a Known non-findings (recurring false positives)
+
+*(Seed list — confirmations are the highest-leverage scan-suppression input.)*
+
+- "Fuseki SPARQL endpoint is open without auth" — public **query** is the 
documented default; restricting it is the operator's Shiro config. A report is 
`VALID` only if a *configured* restriction is bypassed or an *update/admin* 
surface is anonymously reachable. *(documented default)*
+- "Default `admin`/`pw`, no TLS" — the example setup, documented as 
not-for-production → `OUT-OF-MODEL: non-default-build`. *(documented)*
+- "SPARQL query consumes lots of CPU/memory" — pending the §8 resource line; 
likely operator-tuned (query timeout) unless super-linear on a small query. 
*(inferred)*
+- "ARQ can call JavaScript / custom functions" — only if the operator enabled 
them; on a trusted/admin endpoint that's by-design. `OUT-OF-MODEL: 
trusted-input` / `non-default-build` unless reachable anonymously. *(inferred — 
confirm the default)*
+- "Embedding app built an injectable SPARQL string" — the app's bug, not 
Jena's. `OUT-OF-MODEL: trusted-input`. *(inferred)*
+
+## §12 Conditions that would change this model
+
+- A change to Fuseki's default auth posture (public-query / localhost-admin), 
the example-setup defaults, or the SPARQL-Update default. *(documented knobs)*
+- A change to `SERVICE`/`file:`/JS-function defaults or their restrictability. 
*(inferred)*
+- A new network surface or a new parser. *(inferred)*
+- A report that cannot be routed to one §13 disposition → revise the model.
+
+## §13 Triage dispositions
+
+| Disposition | Meaning | Licensed by |
+| --- | --- | --- |
+| `VALID` | Violates a §8 property via an in-scope adversary/input 
(config-bypass, anonymous write/admin, SSRF/file-read/XXE/code-exec from an 
in-scope query under default config). | §8, §6, §7 |
+| `VALID-HARDENING` | No §8 property broken, but a §11 misuse is easy enough 
to harden (safer defaults, SERVICE allow-list, parser limits). | §11 |
+| `OUT-OF-MODEL: trusted-input` | Requires operator config (shiro.ini, 
enabling JS functions, exposing admin) or the embedding app's own untrusted 
input. | §6, §7 |
+| `OUT-OF-MODEL: adversary-not-in-scope` | Requires host/JVM/config control. | 
§7 |
+| `OUT-OF-MODEL: unsupported-component` | Lands in `jena-examples` / tests / 
benchmarks. | §3 |
+| `OUT-OF-MODEL: non-default-build` | Only manifests under a 
discouraged/non-default §5a setting (example creds, JS functions on, admin 
exposed). | §5a |
+| `BY-DESIGN: property-disclaimed` | Concerns a §9-disclaimed property 
(operator-enabled code exec, no-TLS-by-default, embedding-app SPARQL 
injection). | §9 |
+| `KNOWN-NON-FINDING` | Matches a §11a entry. | §11a |
+| `MODEL-GAP` | Cannot be routed — triggers §12. | §12 |
+
+## §14 Open questions for the maintainers
+
+**Wave 1 — scope & Fuseki defaults:**
+1. Confirm scope is the `apache/jena` monorepo with **Fuseki + ARQ + RIOT + 
TDB** as the in-model core, and `jena-examples`/tests/benchmarks out. → §2/§3.
+2. **SPARQL Update / Graph Store write default:** does a Fuseki dataset ship 
**read-only** by default, or can it be update-enabled-and-unauthenticated? 
(Decides whether anonymous write is in-model or a misconfig.) → §5a/§8.
+3. Confirm the documented default — public query, localhost-only admin, 
example `admin`/`pw` is not-for-production (`non-default-build`). → §5a/§11a.
+
+**Wave 2 — the high-value query surfaces (the Jena CVE classes):**
+4. **`SERVICE` federation (SSRF):** is it enabled by default, and can it be 
disabled / allow-listed? Is an SSRF via `SERVICE` from an anonymous query 
`VALID`? → §8/§9/§10.
+5. **`file:` / arbitrary-URI access** via FROM / FROM NAMED / SERVICE: is 
local-file read from an untrusted query prevented by default? → §8/§9.
+6. **ARQ JavaScript / custom functions:** opt-in? If enabled and reachable 
anonymously, is code execution `VALID` or by-design-operator-enabled? → 
§5a/§9/§11a.
+7. **RIOT / RDF-XML XXE:** are external entities (and `file:` fetches) 
disabled by default in the parsers? → §8.

Review Comment:
   RDF/XML - XXE is disabled (JenaXMLInput).
   
   JSON-LD has it's own version of the XXE concern.
   



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