Hello,
Thank you for your answer. I have got 'bibrank' problem now. I have installed invneio from the last souce from GIT. I started 'bibsched' daemon, it is running. I also started other daemons sudo -u apache /opt/invenio/bin/bibindex -f50000 -s5m sudo -u apache /opt/invenio/bin/bibreformat -oHB -s5m sudo -u apache /opt/invenio/bin/webcoll -v0 -s5m sudo -u apache /opt/invenio/bin/bibrank -f50000 -s5m sudo -u apache /opt/invenio/bin/bibsort -s5m But, 'bibrank' daemon has problem. It seems 'bibrank' cannot be re-submitted. The error is Light emergency from http://invenio-test.ihep.ac.cn:<http://invenio-test.ihep.ac.cn/> BibTask failed: BibTask with ERRORS: #13 bibrank -> CERROR Here is the error log 2014-06-23 15:30:35 --> Task #13 finished but not resubmitted. [RUNNING] 2014-06-23 15:30:36 --> Unexpected error occurred: . 2014-06-23 15:30:36 --> Traceback is: 2014-06-23 15:30:36 --> File "/usr/lib64/python2.6/site-packages/invenio/bibtask.py", line 606, in task_init 2014-06-23 15:30:36 --> ret = _task_run(task_run_fnc) 2014-06-23 15:30:36 --> File "/usr/lib64/python2.6/site-packages/invenio/bibtask.py", line 1146, in _task_run 2014-06-23 15:30:36 --> if callable(task_run_fnc) and task_run_fnc(): 2014-06-23 15:30:36 --> File "/usr/lib64/python2.6/site-packages/invenio/bibrank.py", line 159, in task_run_core 2014-06-23 15:30:36 --> func_object(key) 2014-06-23 15:30:36 --> File "/usr/lib64/python2.6/site-packages/invenio/bibrank_tag_based_indexer.py", line 443, in citation 2014-06-23 15:30:36 --> return bibrank_engine(run) 2014-06-23 15:30:36 --> File "/usr/lib64/python2.6/site-packages/invenio/bibrank_tag_based_indexer.py", line 356, in bibrank_engine 2014-06-23 15:30:36 --> func_object(rank_method_code, cfg_name, config) 2014-06-23 15:30:36 --> File "/usr/lib64/python2.6/site-packages/invenio/bibrank_tag_based_indexer.py", line 68, in citation_exec 2014-06-23 15:30:36 --> dic, index_update_time = get_citation_weight(rank_method_code, config) 2014-06-23 15:30:36 --> File "/usr/lib64/python2.6/site-packages/invenio/bibrank_citation_indexer.py", line 141, in get_citation_weight 2014-06-23 15:30:36 --> weights = process_and_store(updated_recids, config, chunk_size) 2014-06-23 15:30:36 --> File "/usr/lib64/python2.6/site-packages/invenio/bibrank_citation_indexer.py", line 194, in process_and_store 2014-06-23 15:30:36 --> store_weights_cache(weights) 2014-06-23 15:30:36 --> File "/usr/lib64/python2.6/site-packages/invenio/bibrank_citation_indexer.py", line 202, in store_weights_cache 2014-06-23 15:30:36 --> redis.set('citations_weights', serialize_via_marshal(weights)) 2014-06-23 15:30:36 --> File "/usr/lib/python2.6/site-packages/nydus/db/base.py", line 133, in __call__ 2014-06-23 15:30:36 --> return self.__cluster.execute(self.__path, args, kwargs) 2014-06-23 15:30:36 --> File "/usr/lib/python2.6/site-packages/nydus/db/base.py", line 86, in execute 2014-06-23 15:30:36 --> conn = self.__connections_for(path, retry_for=conn.num, args=args, kwargs=kwargs)[0] 2014-06-23 15:30:36 --> File "/usr/lib/python2.6/site-packages/nydus/db/routers/base.py", line 26, in wrapped 2014-06-23 15:30:36 --> return func(*args, **kwargs) 2014-06-23 15:30:36 --> File "/usr/lib/python2.6/site-packages/nydus/db/base.py", line 121, in __connections_for 2014-06-23 15:30:36 --> return [self[n] for n in self.router.get_dbs(attr=attr, args=args, kwargs=kwargs, **fkwargs)] 2014-06-23 15:30:36 --> File "/usr/lib/python2.6/site-packages/nydus/db/routers/base.py", line 26, in wrapped 2014-06-23 15:30:36 --> return func(*args, **kwargs) 2014-06-23 15:30:36 --> File "/usr/lib/python2.6/site-packages/nydus/db/routers/base.py", line 78, in get_dbs 2014-06-23 15:30:36 --> self._handle_exception(e) 2014-06-23 15:30:36 --> File "/usr/lib/python2.6/site-packages/nydus/db/routers/base.py", line 128, in _handle_exception 2014-06-23 15:30:36 --> raise e 2014-06-23 15:30:36 --> Exiting. How do fix the problem? Please giv eme some clue. Thanks a lot, Best regards, Lanxin ________________________________ From: Miguel Martín [[email protected]] Sent: 19 June 2014 12:40 To: Lanxin Ma; Robert Atkinson; project-invenio-general (Invenio users) Subject: Re: invenio based SL6.x Hi, I also got a lot of 500 Internal Server Errors (using last source from GIT) I got rid of them by: 1) Editing /opt/invenio/etc/invenio-local.conf and adding: CFG_WEBSESSION_STORAGE = mysql (then do not forget to run inveniocfg --update-all and then restarting Apache) 2) Modifying get_session function from /usr/lib64/python2.6/site-packages/invenio/session.py which ended being like: def get_session(req, sid=None): """ Obtain a session. If the session has already been created for the current request, returns the already existing session. @param req: the mod_python request object. @type req: mod_python request object @param sid: the session identifier of an already existing session. @type sid: 32 hexadecimal string @return: the session. @rtype: InvenioSession @raise ValueError: if C{sid} is provided and it doesn't correspond to a valid session. """ # ADDED LINES TO AVOID ERRORS -------------------- if CFG_WEBSESSION_STORAGE == 'mysql': InvenioSession = InvenioSessionMySQL elif CFG_WEBSESSION_STORAGE == 'redis': InvenioSession = InvenioSessionRedis # ------------------------------------------------ if sid is not None: req._session = InvenioSession(req, sid) return req._session if not hasattr(req, '_session'): req._session = InvenioSession(req, sid) return req._session It seems that somewhere in the code there is a "from invenio.session import get_session" and InvenioSession variable was not set. Hope this helps. Regards, Miguel El 19/06/14 12:08, Lanxin Ma escribió: Hello, I installed invenio using invneio-kickstart script according the instruction. Now, I can get the first web page. I can see the collections of demo sites. But when I click a sub-collection, for example: Multimedia & Arts -> Pictures It show me the following Authorization failure You are not authorized to view this collection It seems it is permission problem. How to fix the problem? Another problem: when I try to login with admin email and the empty password, it shows me that "500 Internal Server Error" why? what's wrong? Could you give me some clue? Thanks a lot, Lanxin ________________________________ From: Robert Atkinson Sent: 10 June 2014 18:57 To: project-invenio-general (Invenio users) Subject: Re: invenio based SL6.x with a clean machine, go here: http://invenio-software.org/wiki/Installation/Kickstart install git and clone the git invenio-devscript repository as shown on the web page. run the kickstart script as root. It will bomb out but you have to run it to get some stuff done. Then you can fix the problems and run it again: you have to enable some repositories if they are not enabled already. check /etc/yum.repos.d/ try grep "enabled=1" /etc/yum.repos.d/*.repo or if you have puppet, grep "enabled=1" /etc/yum-puppet.repos.d/*.repo CERN as a lot enabled but in other locations that may not be the case. Here's what they have: $ grep "enabled=1" /etc/yum-puppet.repos.d/*.repo /etc/yum-puppet.repos.d/ai6.repo:enabled=1 /etc/yum-puppet.repos.d/epel.repo:enabled=1 /etc/yum-puppet.repos.d/hardware-tools.repo:enabled=1 /etc/yum-puppet.repos.d/hw6.repo:enabled=1 /etc/yum-puppet.repos.d/lemon6.repo:enabled=1 /etc/yum-puppet.repos.d/lemon.repo:enabled=1 /etc/yum-puppet.repos.d/slc6-cernonly.repo:enabled=1 /etc/yum-puppet.repos.d/slc6-extras.repo:enabled=1 /etc/yum-puppet.repos.d/slc6-os.repo:enabled=1 /etc/yum-puppet.repos.d/slc6-scl.repo:enabled=1 /etc/yum-puppet.repos.d/slc6-updates.repo:enabled=1 you will at least need to enable epel you may have to do: #yum install hdf-devel? or download and instal hdf5-1.8.7-1.el6.rf.x86_64.rpm from http://pkgs.repoforge.org/hdf5/ and download hdf5-devel-1.8.7-1.el6.rf.x86_64.rpm from same you may run into: Making install in po /bin/sh: line 17: cd: po: No such file or directory make[1]: *** [install-recursive] Error 1 make: *** [install] Error 2 that problem has to do with the script executing commands as apache. apache's shell may be /bin/nologin change it to /bin/bash edit /etc/passwd to change apache’s shell from /bin/nologin to /bin/bash also try going into /<your path to repository>/src/invenio/po and change the file permissions to ugo+x for everything. another problem you may run into is if you do not have python 2.7. iPython requires that. If you don't want or need ipython you can comment out the installation instruction for it to get past the py 2.7 requirement. Commented Ipython out from /<path to your git repo>/src/invenio/requirements-extra.txt I think I have covered all the "gotchas" with the kickstart script that we ran into at Fermilab. The kickstart script is the only possible way to get invenio with scientific linux unless you have someone set it up for you. Rob On 06/10/2014 02:39 AM, Samuele Kaplun wrote:> Hi Lanxin, > > In data martedì 10 giugno 2014 04:33:24, Lanxin Ma ha scritto: >> Can Invenio be installed / run on SL6.x X86_64 ? >> >> Does any body have experince on this ? > > at CERN we use SLC6.x X86_64 (derived from SL6.x) for our production server. > Latest Invenio releases work perfectly there. > > Best regards, > Samuele >
