Hi Liam, /scratch/benchmarks/pyfr/bin/pyfr partition 8 cube_hex24.pyfrm . But this is not producing any output file.
As per Ray’s message, the last entry is the path to where you want the partitioned mesh to be put. Since you have put ‘.' the partitioned mesh will be written to the same directory as the original mesh, and as such will overwrite it (hence you do not see a new file appear, but cube_hex24.pyfrm should now have 8 partitions). mpirun -np 10 --map-by node -machinefile machinefile -x PATH -x LD_LIBRARY_PATH -x OMP_NUM_THREADS=1 -x PYTHONPATH /scratch/benchmarks/pyfr/bin/pyfr run -b openmp -p cube_hex24.pyfrm config.ini It appears you are partitioning the mesh into 8 pieces, but launching 10 MPI ranks? Cheers Peter Dr Peter Vincent MSci ARCS DIC PhD Reader in Aeronautics and EPSRC Fellow Department of Aeronautics Imperial College London South Kensington London SW7 2AZ UK web: www.imperial.ac.uk/aeronautics/research/vincentlab<http://www.imperial.ac.uk/aeronautics/research/vincentlab> twitter: @Vincent_Lab<https://twitter.com/Vincent_Lab> On 7 Dec 2016, at 12:11, Ray <[email protected]<mailto:[email protected]>> wrote: Hi, Liam, I think you should use this command: pyfr partition 8 cube_hex24.pyfrm "path" "path" is a folder at your current folder. Then you'll see cube_hex24.pyfrm in folder "path". 在 2016年12月7日星期三 UTC+8下午8:03:05，Liam Doult写道： Hi, my current error: /scratch/benchmarks/pyfr/bin/pyfr partition 8 cube_hex24.pyfrm /scratch/benchmarks/pyfr/cube_hex/solution.pyfrs . Traceback (most recent call last): File "/scratch/benchmarks/pyfr/bin/pyfr", line 11, in <module> load_entry_point('pyfr==1.5.0', 'console_scripts', 'pyfr')() File "/scratch/benchmarks/pyfr/lib/python3.5/site-packages/pyfr-1.5.0-py3.5.egg/pyfr/__main__.py", line 110, in main File "/scratch/benchmarks/pyfr/lib/python3.5/site-packages/pyfr-1.5.0-py3.5.egg/pyfr/__main__.py", line 171, in process_partition File "/scratch/benchmarks/pyfr/lib/python3.5/site-packages/pyfr-1.5.0-py3.5.egg/pyfr/__main__.py", line 164, in <genexpr> File "/scratch/benchmarks/pyfr/lib/python3.5/site-packages/pyfr-1.5.0-py3.5.egg/pyfr/readers/native.py", line 16, in __init__ File "/usr/lib64/python3.5/site-packages/h5py/_hl/files.py", line 272, in __init__ fid = make_fid(name, mode, userblock_size, fapl, swmr=swmr) File "/usr/lib64/python3.5/site-packages/h5py/_hl/files.py", line 92, in make_fid fid = h5f.open(name, flags, fapl=fapl) File "h5py/_objects.pyx", line 54, in h5py._objects.with_phil.wrapper (/tmp/pip-at6d2npe-build/h5py/_objects.c:2684) File "h5py/_objects.pyx", line 55, in h5py._objects.with_phil.wrapper (/tmp/pip-at6d2npe-build/h5py/_objects.c:2642) File "h5py/h5f.pyx", line 76, in h5py.h5f.open (/tmp/pip-at6d2npe-build/h5py/h5f.c:1930) OSError: Unable to open file (Unable to open file: name = '/scratch/benchmarks/pyfr/cube_hex/solution.pyfrs', errno = 2, error message = 'no such file or directory', flags = 0, o_flags = 0) I managed to get the application to run with /scratch/benchmarks/pyfr/bin/pyfr partition 8 cube_hex24.pyfrm . But this is not producing any output file. my mpirun: mpirun -np 10 --map-by node -machinefile machinefile -x PATH -x LD_LIBRARY_PATH -x OMP_NUM_THREADS=1 -x PYTHONPATH /scratch/benchmarks/pyfr/bin/pyfr run -b openmp -p cube_hex24.pyfrm config.ini any solutions? Please? Regards Liam -- You received this message because you are subscribed to the Google Groups "PyFR Mailing List" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]<mailto:[email protected]>. To post to this group, send email to [email protected]<mailto:[email protected]>. Visit this group at https://groups.google.com/group/pyfrmailinglist. For more options, visit https://groups.google.com/d/optout. -- You received this message because you are subscribed to the Google Groups "PyFR Mailing List" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send an email to [email protected]. Visit this group at https://groups.google.com/group/pyfrmailinglist. For more options, visit https://groups.google.com/d/optout.
