Hi, thanks for the quick response
-np 10 is a typo but not the problem. The problem is generating the .pyfrs
file with data.
regards
Liam
On Wednesday, December 7, 2016 at 2:03:05 PM UTC+2, Liam Doult wrote:
>
> Hi,
>
> my current error:
>
> /scratch/benchmarks/pyfr/bin/pyfr partition 8 cube_hex24.pyfrm
> /scratch/benchmarks/pyfr/cube_hex/solution.pyfrs .
> Traceback (most recent call last):
> File "/scratch/benchmarks/pyfr/bin/pyfr", line 11, in <module>
> load_entry_point('pyfr==1.5.0', 'console_scripts', 'pyfr')()
> File
> "/scratch/benchmarks/pyfr/lib/python3.5/site-packages/pyfr-1.5.0-py3.5.egg/pyfr/__main__.py",
>
> line 110, in main
> File
> "/scratch/benchmarks/pyfr/lib/python3.5/site-packages/pyfr-1.5.0-py3.5.egg/pyfr/__main__.py",
>
> line 171, in process_partition
> File
> "/scratch/benchmarks/pyfr/lib/python3.5/site-packages/pyfr-1.5.0-py3.5.egg/pyfr/__main__.py",
>
> line 164, in <genexpr>
> File
> "/scratch/benchmarks/pyfr/lib/python3.5/site-packages/pyfr-1.5.0-py3.5.egg/pyfr/readers/native.py",
>
> line 16, in __init__
> File "/usr/lib64/python3.5/site-packages/h5py/_hl/files.py", line 272,
> in __init__
> fid = make_fid(name, mode, userblock_size, fapl, swmr=swmr)
> File "/usr/lib64/python3.5/site-packages/h5py/_hl/files.py", line 92, in
> make_fid
> fid = h5f.open(name, flags, fapl=fapl)
> File "h5py/_objects.pyx", line 54, in h5py._objects.with_phil.wrapper
> (/tmp/pip-at6d2npe-build/h5py/_objects.c:2684)
> File "h5py/_objects.pyx", line 55, in h5py._objects.with_phil.wrapper
> (/tmp/pip-at6d2npe-build/h5py/_objects.c:2642)
> File "h5py/h5f.pyx", line 76, in h5py.h5f.open
> (/tmp/pip-at6d2npe-build/h5py/h5f.c:1930)
> OSError: Unable to open file (Unable to open file: name =
> '/scratch/benchmarks/pyfr/cube_hex/solution.pyfrs', errno = 2, error
> message = 'no such file or directory', flags = 0, o_flags = 0)
>
> I managed to get the application to run with
> /scratch/benchmarks/pyfr/bin/pyfr partition 8 cube_hex24.pyfrm .
> But this is not producing any output file.
>
> my mpirun:
> mpirun -np 10 --map-by node -machinefile machinefile -x PATH -x
> LD_LIBRARY_PATH -x OMP_NUM_THREADS=1 -x PYTHONPATH
> /scratch/benchmarks/pyfr/bin/pyfr run -b openmp -p cube_hex24.pyfrm
> config.ini
>
> any solutions?
> Please?
>
> Regards
> Liam
>
>
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