I tried to open it by bsddb.btopen. It was very fast and didn't require any
memory prior to actual query. Does it have to do with recent BlastDbBase?
x = bsddb.btopen('R1.seqlen')
Yours,
Namshin Kim
On Mon, Oct 13, 2008 at 12:52 PM, Namshin Kim <[EMAIL PROTECTED]> wrote:
> Hi,
>
> I made a seqdb.BlastDB for 30million sequences. My problem is that it
> requires very long time (more than 5 min) to load that seqdb.BlastDB. I
> checked memory and found out that it actually load all indice into memory,
> 30million. Due to this behavior, pygr NLMSA has become very slow NLMSA. Does
> anybody know how to solve seqdb.BlastDB problem?
>
> Thanks,
> Namshin Kim
>
>
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