On Oct 21, 2008, at 6:54 PM, Namshin Kim wrote:
> And I ran all tests for Python 2.6 and found some errors. Megatest
> has no errors for Python 2.6.
>
> ======== pygrtest_common.py error
> Traceback (most recent call last):
> File "protest.py", line 12, in <module>
> import pygrtest_common
> File "/result/pygr_megatest/src_save/pygr/tests/
> pygrtest_common.py", line 21, in <module>
> ver = ".".join(platform.python_version_tuple()[:2])
> TypeError: sequence item 0: expected string, int found
I guess they changed the python_version_tuple format...
> ======== fixes for pygrtest_common.py
> ver = ".".join(map(str, platform.python_version_tuple()[:2]))
Makes sense...
> ======== sequence_test.py error
> /result/pygr_megatest/src_save/pygr/build/lib.linux-x86_64-2.6/pygr/
> seqdb.py:309: DeprecationWarning:
> os.popen2 is deprecated. Use the subprocess module.
> ifile,ofile=os.popen2(cmd)
ignore for the moment. Unfortunately subprocess was only introduced
in Python 2.4.
>
> Traceback (most recent call last):
> File "protest.py", line 123, in <module>
> if do_test(sys.argv[2],sys.argv[3],sys.argv[4]):
> File "protest.py", line 33, in do_test
> m()
> File "/result/pygr_megatest/src_save/pygr/tests/sequence_test.py",
> line 88, in blast_test
> minAlignSize=14,pIdentityMin=0.5)
> File "pygr.cnestedlist.pyx", line 599, in
> pygr.cnestedlist.NLMSASlice.edges
> File "pygr.cnestedlist.pyx", line 831, in
> pygr.cnestedlist.NLMSASlice.groupByIntervals
> File "pygr.cnestedlist.pyx", line 882, in
> pygr.cnestedlist.NLMSASlice.filterIvalConservation
> TypeError: 'dict' object doesn't support item deletion
This error message is puzzling. The Python 2.6 docs explicitly
support the use of del on a dict object:
"del d[key]
Remove d[key] from d. Raises a KeyError if key is not in the map."
Also, it's hard to see how all the megatests could pass if such a
basic language feature were removed in 2.6. This message sounds like
a bug to me... but whose bug? My first guess is that this might be a
Python 2.6 bug, since it's still quite new...
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