On Feb 11, 2:44 pm, James Taylor <[email protected]> wrote:
> It'd be really cool to compare some of the other features like
> IntervalIndexFile vs. NLMSA. I've not had time to do it, but it might
> be interesting (and encourage one or all of us to do some
> optimization ;).
lately I've become interested in exploring interval overlap query
algorithms. It looks like just about everything in the genome is
transcribed at some point, thus we will end up with orders of
magnitude more interval data than what we were used to have. Having a
seamless way to query these is just as important as being able to
fetch a sequence and operate on it.
If you guys write some docs on how this IntervalIndexFile is used in
practice, with some some examples etc. I'll write benchmarks to
compare it to other type of queries.
Istvan
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