> p.s. but please do post your code when you can!
Please see roche454.tgz attached to the discussion group. roche454/buildProject.py - Maps the reads onto a reference - in order to build a project you need: 1.ATG.454Reads.fna -- sequence fasta file for controls 1.ATG.454Reads.qual -- quality scores for controls(optional) 1.TCA.454Reads.fna -- sequence fasta file for the library 1.TCA.454Reads.qual -- quality scores for library(optional) 1.wells -- a wells file from 454 (optional) (these are the standard names, which 454 results take) The starting number corresponds to the region of the chip where the data come from. Sequences may contain a prefix tag. The user may (optionally) specify what the tags are to separate the sequences based on that. Sequences that don't match any tag are assigned a None tag automatically. roche454/cloneStat.py - Example usage of stored reference mapping. - Here the reads on region 4 with tag CTCA roche454/roche454.py - Main class hierarchy --~--~---------~--~----~------------~-------~--~----~ You received this message because you are subscribed to the Google Groups "pygr-dev" group. To post to this group, send email to [email protected] To unsubscribe from this group, send email to [email protected] For more options, visit this group at http://groups.google.com/group/pygr-dev?hl=en -~----------~----~----~----~------~----~------~--~---
