Hi, I have constructed NLMSA files on a Linux station with success, but the last step failed. I checked the folder and file access mode, and have not seen anything abnormal. I transfered the data on a Windows station where I obtained the same error message.
Thanks for your help, Michel *** WARNING: Unknown sequence oryCun1.scaffold_208340 ignored... *** WARNING: Unknown sequence panTro1.chr6_random ignored... warning: non-alignment text lines ignored: prefix , count 16190860 warning: non-alignment text lines ignored: prefix #, count 48 Index files saved. Note: the NLMSA.seqDict was not saved to a file. This is not necessary if you intend to save the NLMSA to pygr.Data. But if you wish to open this NLMSA independently of pygr.Data, you should call NLMSA.save_seq_dict() to save the seqDict info to a file, or in the future pass the saveSeqDict=True option to NLMSA.build(). To turn off this message, use the verbose=False option >>> msa.build(saveSeqDict=True) Traceback (most recent call last): File "<stdin>", line 1, in ? File "cnestedlist.pyx", line 1992, in pygr.cnestedlist.NLMSA.build ValueError: not opened in write mode --~--~---------~--~----~------------~-------~--~----~ You received this message because you are subscribed to the Google Groups "pygr-dev" group. To post to this group, send email to pygr-dev@googlegroups.com To unsubscribe from this group, send email to pygr-dev+unsubscr...@googlegroups.com For more options, visit this group at http://groups.google.com/group/pygr-dev?hl=en -~----------~----~----~----~------~----~------~--~---
