Hi all,
some thoughts...
Prior to a 0.8 final release, I would like to have friendly,
doctest-testable, fully functional tutorials on:
1. using NLMSAs
2. serving seqdbs, alignments, and annotations with an XML-RPC server
(both client and server side)
3. loading a "gene build" onto a genome and into an NLMSA,
done properly (so that I can find an exon by an NLMSA
query, and then find previous or next exons, or the
whole gene identity).
4. a discussion or comparison of the different storage types for
annotation DBs & how that relates to on-disk storage and
scalability (think: pickled dict; bsddb; sql-based wrapping).
I'm working on #1, and could probably write #4 as well. #2 is something
I'm very interested in doing soon. For #3 I have some code that works
but I don't understand it.
--titus
--
C. Titus Brown, [email protected]
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