Hi Paul, Would you please give your WORLDBASEPATH? $ echo $WORLDBASEPATH
Thanks, Namshin Kim On Fri, Sep 4, 2009 at 9:54 AM, Paul Rigor (gmail) <paulri...@gmail.com>wrote: > Hi Namshin, > I'm still encountering the same error as before regarding the download of > genome resources. Download the 44way alignment also does not download the > necessary dependencies. Could there by something wrong with the URL paths > saved in on the resources. You specified 'biodb2' but during the download, > the url's are directed to 'biodb.' > > With WOLRDBASEPATH not set, I get the following error. > > Please see: > INFO downloader.download_unpickler: Beginning download of > http://biodb.bioinformatics.ucla.edu/GENOMES/ponAbe2/chromFa.tar.gz to > /extra/bal > dig1/genomics/pygrdata/genomes/ponAbe2.tar.gz... > INFO downloader.download_monitor: downloaded 8192 bytes (3593.0%)... > INFO downloader.download_unpickler: Download done. > INFO downloader.uncompress_file: untarring > /extra/baldig1/genomics/pygrdata/genomes/ponAbe2.tar.gz... > ... > ReadError: not a gzip file > > However, when I set my WORLDBASEPATH to use the biodb2 server, the download > is successful. So there's something wrong with the hardcoded url that's > distributed with pygr (0.8 beta). But perhaps the xmlrpc resources on the > server should be fixed as well. > > Thanks, > Paul > > > > On Thu, Sep 3, 2009 at 4:22 PM, cjlee112 <cjlee...@gmail.com> wrote: > >> >> Yes, please pass on to Namshin any debugging information you can supply. >> >> Thanks! >> >> Chris >> >> On Sep 3, 2009, at 3:26 PM, Paul Rigor (gmail) wrote: >> >> > Hi Chris, >> > >> > Does this mean that the 44way alignment distributed by the UCLA >> > server is foobar since I ran exactly those same commands and no >> > genome dependencies were downloaded? >> > >> > Thanks, >> > Paul >> >> > > > > > --~--~---------~--~----~------------~-------~--~----~ You received this message because you are subscribed to the Google Groups "pygr-dev" group. To post to this group, send email to pygr-dev@googlegroups.com To unsubscribe from this group, send email to pygr-dev+unsubscr...@googlegroups.com For more options, visit this group at http://groups.google.com/group/pygr-dev?hl=en -~----------~----~----~----~------~----~------~--~---
