hm, i'm looking at the ext source ( 
https://github.com/bbangert/beaker/blob/master/beaker/ext/database.py
) and the files mike noted as well.

i likely missed something, but I don't see anything in the
ext.backend or pyramid_beaker that handles closing connections, and it
looks like very rudimentary connection/pooling management

just a couple ideas , likely bad ones :

how many requests /connections do you need to re-create this ?  could
you try using a query log that shows the connection id ?  that helps
me bugfix most sql and framework issues

could you try a dirty hack, save the session connection to a request
(or other) attribute, and then use a subscriber to manually close
it ?

is there anything in the connection string that is overlapping with
your app ?  any chance sqlalchemy is keeping the app open because it
thinks it's the session ?

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