I have complied pymol-0_73, with ext-0_51, useing the following
build.com in the ext subdirectory. When I try to run pymol.com I get
the following message:
omega[272]:/misc/local/src/pymol/pymol % ./pymol.com
Traceback (innermost last):
File "/misc/local/src/pymol/pymol/modules/launch_pymol.py", line 6, in
?
import pymol
File "/misc/local/src/pymol/pymol/modules/pymol/__init__.py", line 24,
in ?
import _cmd
ImportError: 4192945:/misc/local/src/pymol/pymol/ext/bin/python: rld:
Fatal Error: Cannot Successfully map soname 'libpython1.5.so' under any
of the filenames
/usr/local/lib/libpython1.5.so:/usr/lib32/libpython1.5.so:/usr/lib32/internal/libpython1.5.so:/lib32/libpython1.5.so:/opt/lib32/libpython1.5.so:
omega[273]:/misc/local/src/pymol/pymol %
Any help would be appreciated.
# build.com in ext directory
#!/bin/csh
#
#---------------------------------------------------------------------
# Build script for making PyMOL External dependencies
#---------------------------------------------------------------------
# (can't do this stuff in a makefile cause we need to define
# some important environmental variables)
#
#- Paths -------------------------------------------------------------
#
# --- Base
#setenv BASE /home/local/export/ext
setenv BASE /misc/local/src/pymol/pymol/ext
#
#- Targets -------------------------------------------------------------
# -- Linux with just Tcl/Tk
# setenv PYMOL_TARGETS "tcl tk zlib python distutils numpy pmw png-linux
glut-linux"
#
# -- Linux with Tcl/Tk and wxPython
# setenv PYMOL_TARGETS tcl tk zlib python distutils numpy pmw png-linux
glut-linux glib gtk wxgtk wxpython"
#
# -- SGI/IRIX with just Tcl/Tk
# setenv PYMOL_TARGETS "tcl tk zlib python distutils numpy pmw png-irix
glut-irix"
#
# -- SGI/IRIX with Tcl/Tk and wxPython
setenv PYMOL_TARGETS "tcl tk zlib python distutils numpy pmw png-irix
glut-irix glib gtk wxgtk wxpython"
#---------------------------------------------------------------------
#
#- For creation of a shared python library --------------------------
# --- Linux
#setenv LDALLFLAGS "--whole-archive"
# --- SGI/IRIX
setenv LDALLFLAGS "-n32 -all"
#---------------------------------------------------------------------
#
#- Misc --------------------------------------------------------------
#
# --- SGI/IRIX
setenv SGI_ABI -n32
setenv MAKE gmake
setenv CXX CC
#
# --- Linux
#setenv MAKE make
#
#- Path pre-emption critical for building gtk/wx ---------------------
#
setenv PATH ${BASE}/bin:$PATH
setenv LD_LIBRARY_PATH ${BASE}/lib
#
#- Build --------------------------------------------------------------
$MAKE -f Makefile.in $1
--
thanks,
Danny G Smith
UNIX Systems Administrator
Crystallography Dept Oklahoma Medical Research Foundation
phone 271-8954 fax 271-7953
=========================================================
UNIX air conditioned environment, keep the windows closed
