Danny, I think your problem is one of two possibilities: either your LD_LIBRARY_PATH is not being set correctly by pymol.com, or your python1.5.so shared object isn't valid.
You might try using linking against a static Python library as described in http://pymol.sourceforge.net/workarounds.html Good luck! Warren -- mailto:war...@sunesis.com Warren L. DeLano, Ph.D. Informatics Manager Sunesis Pharmaceuticals, Inc. 341 Oyster Point Blvd. S. San Francisco, CA 94080 (650)-266-3606 fax: (650)-266-3501 > -----Original Message----- > From: Danny G Smith [mailto:d...@omega.omrf.ouhsc.edu] > Sent: Tuesday, December 18, 2001 12:52 PM > To: pymol-users@lists.sourceforge.net > Subject: [PyMOL] pymol on SGI > > > I have complied pymol-0_73, with ext-0_51, useing the following > build.com in the ext subdirectory. When I try to run pymol.com I get > the following message: > > omega[272]:/misc/local/src/pymol/pymol % ./pymol.com > Traceback (innermost last): > File "/misc/local/src/pymol/pymol/modules/launch_pymol.py", > line 6, in > ? > import pymol > File > "/misc/local/src/pymol/pymol/modules/pymol/__init__.py", line 24, > in ? > import _cmd > ImportError: 4192945:/misc/local/src/pymol/pymol/ext/bin/python: rld: > Fatal Error: Cannot Successfully map soname 'libpython1.5.so' > under any > of the filenames > /usr/local/lib/libpython1.5.so:/usr/lib32/libpython1.5.so:/usr > /lib32/internal/libpython1.5.so:/lib32/libpython1.5.so:/opt/li > b32/libpython1.5.so: > omega[273]:/misc/local/src/pymol/pymol % > > > Any help would be appreciated. > > > # build.com in ext directory > #!/bin/csh > # > #--------------------------------------------------------------------- > # Build script for making PyMOL External dependencies > #--------------------------------------------------------------------- > # (can't do this stuff in a makefile cause we need to define > # some important environmental variables) > # > #- Paths ------------------------------------------------------------- > # > # --- Base > #setenv BASE /home/local/export/ext > setenv BASE /misc/local/src/pymol/pymol/ext > # > #- Targets > ------------------------------------------------------------- > # -- Linux with just Tcl/Tk > # setenv PYMOL_TARGETS "tcl tk zlib python distutils numpy > pmw png-linux > glut-linux" > # > # -- Linux with Tcl/Tk and wxPython > # setenv PYMOL_TARGETS tcl tk zlib python distutils numpy pmw > png-linux > glut-linux glib gtk wxgtk wxpython" > # > # -- SGI/IRIX with just Tcl/Tk > # setenv PYMOL_TARGETS "tcl tk zlib python distutils numpy > pmw png-irix > glut-irix" > # > # -- SGI/IRIX with Tcl/Tk and wxPython > setenv PYMOL_TARGETS "tcl tk zlib python distutils numpy pmw png-irix > glut-irix glib gtk wxgtk wxpython" > #--------------------------------------------------------------------- > # > #- For creation of a shared python library -------------------------- > # --- Linux > #setenv LDALLFLAGS "--whole-archive" > # --- SGI/IRIX > setenv LDALLFLAGS "-n32 -all" > #--------------------------------------------------------------------- > # > #- Misc -------------------------------------------------------------- > # > # --- SGI/IRIX > setenv SGI_ABI -n32 > setenv MAKE gmake > setenv CXX CC > # > # --- Linux > #setenv MAKE make > # > #- Path pre-emption critical for building gtk/wx --------------------- > # > setenv PATH ${BASE}/bin:$PATH > setenv LD_LIBRARY_PATH ${BASE}/lib > # > #- Build > -------------------------------------------------------------- > $MAKE -f Makefile.in $1 > > > > > -- > thanks, > Danny G Smith > > UNIX Systems Administrator > Crystallography Dept Oklahoma Medical Research Foundation > phone 271-8954 fax 271-7953 > > ========================================================= > UNIX air conditioned environment, keep the windows closed > > _______________________________________________ > PyMOL-users mailing list > PyMOL-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/pymol-users >
