> From: Daan van Aalten [mailto:d...@davapc1.bioch.dundee.ac.uk]

> Is there an option to change the following parameters for 
> drawing hydrogen
> bonds:
> - thickness of the lines
> - number of dashes
> - label (on/off, and fontsize)

The settings you need to change are:

"dash_length" and "dash_gap", which control the length and spacing of
dashes

"dash_width" which controls the pixel thickness of dashes

"dash_radius" which controls the radius of dashes when ray-traced.

You can use "Edit All..." under the settings menu to inspect and adjust
these values.

In recent versions of PyMOL, labels can be shown or hidden with 

hide lables,<distance-object-name>
show labels,<distance-object-name>

Unfortunately, font size is not adjustable because PyMOL currently only
has one uniform bitmap font.  You currently need to use something like
PowerPoint, Photoshop, or Illustrator to add nicer labels onto your
images.

Cheers,
Warren

--
mailto:war...@sunesis.com
Warren L. DeLano, Ph.D.

 

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