Take a look at this link:
http://www.rubor.de/bioinf/tips_modeling.html#addhbond
It contains two simple examples and one python script.
On 8/23/06, selva raj <cryptochrome2...@yahoo.co.in> wrote:
Dear Pymol users,
Would anyone tell me how to draw hydrogen bonds between interacting
atoms in a crystal structure of small molecule using Pymol. An attempt to do
it through mentioning cutoff distance as 3.0, and mode as 0, failed.
Command:
distance (selection1),(selection2)[,3.0[,0]]
This command is showing all possible distances from the selected atoms
Thanking you,
yours friendly.
Selvaraj,
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