Viktor,
maybe pymol is also ray tracing the lines which have a fixed
rendered radius. the fix for this is to "hide lines, (selection)"
where selection is the atoms/bonds you want represented as thin sticks.
zac
Viktor Hornak wrote:
I've noticed another minor problem with internal raytracer: when I set
stick radius to some smaller value (say: set stick_radius=0.05) and
raytrace the model: the raytracer seems to have its own idea about stick
radius, i.e. the changes don't seem to correspond to regular opengl
rendering. In other words, sticks after raytracing are much thicker then
what should correspond to radius=0.02.
I was also wondering what's the state of amber trajectory display. I
tried PyMOL CVS version some weeks ago and it worked but I ran into
problem with trajectory playback when I changed representation to
anything else but lines (for trajectories with more frames, something
like a few hundreds or more).
Looking forward to new pymol version!
Cheers,
-Viktor
On Thu, 2002-12-05 at 13:36, DeLano, Warren wrote:
Laurence,
This is a bug I found a couple of days ago and remedied -- the 3D hash
code in the raytracer was faulty. In the meantime, you may want to
render with PovRay. Would you please send me a quick email (off the
list) with your version and platform information so that I will know
the extent of the problem? (I am unsure whether or not the 0.82
windows release is affected)
By the way, I am well into the wrap-up process for a new release,
and am just trying to incorporate various bits of feedback from past
couple months. It will be out in a few weeks...
--
Ezequiel Panepucci, Ph.D. - Laboratory of Prof. Axel Brunger
HHMI - Stanford University
Phone: 650-736-1714 Cell: 650-714-9414
