Thanks Ezequiel, that was the problem! The rendering of lines occluded rendering of the sticks below certain stick radius. Thanks for spotting the problem.
Cheers, -Viktor On Thu, 2002-12-05 at 14:17, Ezequiel H. Panepucci wrote: > Viktor, > > maybe pymol is also ray tracing the lines which have a fixed > rendered radius. the fix for this is to "hide lines, (selection)" > where selection is the atoms/bonds you want represented as thin sticks. > > zac > > > Viktor Hornak wrote: > > I've noticed another minor problem with internal raytracer: when I set > > stick radius to some smaller value (say: set stick_radius=0.05) and > > raytrace the model: the raytracer seems to have its own idea about stick > > radius, i.e. the changes don't seem to correspond to regular opengl > > rendering. In other words, sticks after raytracing are much thicker then > > what should correspond to radius=0.02. > > > > I was also wondering what's the state of amber trajectory display. I > > tried PyMOL CVS version some weeks ago and it worked but I ran into > > problem with trajectory playback when I changed representation to > > anything else but lines (for trajectories with more frames, something > > like a few hundreds or more). > > > > Looking forward to new pymol version! > > > > Cheers, > > -Viktor > > > > On Thu, 2002-12-05 at 13:36, DeLano, Warren wrote: > > > >>Laurence, > >> This is a bug I found a couple of days ago and remedied -- the 3D hash > >>code in the raytracer was faulty. In the meantime, you may want to > >>render with PovRay. Would you please send me a quick email (off the > >>list) with your version and platform information so that I will know > >>the extent of the problem? (I am unsure whether or not the 0.82 > >>windows release is affected) > >> By the way, I am well into the wrap-up process for a new release, > >>and am just trying to incorporate various bits of feedback from past > >>couple months. It will be out in a few weeks... > > > > > > -- > Ezequiel Panepucci, Ph.D. - Laboratory of Prof. Axel Brunger > HHMI - Stanford University > Phone: 650-736-1714 Cell: 650-714-9414 > > > > ------------------------------------------------------- > This sf.net email is sponsored by:ThinkGeek > Welcome to geek heaven. > http://thinkgeek.com/sf > _______________________________________________ > PyMOL-users mailing list > PyMOL-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/pymol-users -- =================================================================== Viktor Hornak CSB computational facility Phone: (631)632-1439 SUNY at Stony Brook Fax: (631)632-1555 Stony Brook, NY 11794-5115 E-mail: viktor.hor...@sunysb.edu ===================================================================
