Dirk, The trick for displaying "contact" surfaces in PyMOL is to create separate objects for each surface:
create res431, resi 431 create res440, resi 440 show surface, res431 or res440 For CPK, you don't need to do this show spheres, resi 431+440 Cheers, Warren -- mailto:war...@delanoscientific.com Warren L. DeLano, Ph.D. Principal Scientist DeLano Scientific LLC Voice (650)-346-1154 Fax (650)-593-4020 > -----Original Message----- > From: pymol-users-ad...@lists.sourceforge.net [mailto:pymol-users- > ad...@lists.sourceforge.net] On Behalf Of Dirk Kostrewa > Sent: Monday, September 08, 2003 11:15 PM > To: PyMOLBB > Subject: [PyMOL] individual surfaces? > > Dear PyMol users, > > I'm currently trying to display individual surfaces around different > selections of a molecule to show how they contact each other. However, > either > I get only the last surface displayed or a joined surface using the > command > examples below: > > this one gives only the surface of residue 440 > > show surface, ( resid 431 ) > flag ignore, ( not resid 431 ) > show surface, ( resid 440 ) > flag ignore, ( not resid 440 ) > rebuild > > whereas this one gives the joint surface of residues 431 and 440 > > show surface, ( resid 431 or resid 440 ) > flag ignore, ( not ( resid 431 or resid 440 ) ) > rebuild > > How can I display the individual surfaces separately? > > Alternatively, is there a command to display atoms in a CPK > representation? > > Best regards, > > Dirk. > > -- > > **************************************** > Dirk Kostrewa > Paul Scherrer Institut > Life Sciences, OSRA/007 > CH-5232 Villigen PSI, Switzerland > E-mail: dirk.kostr...@psi.ch > Phone: +41-56-310-4722 > Fax: +41-56-310-4556 > WWW: http://www.sb.psi.ch > **************************************** > > > > ------------------------------------------------------- > This sf.net email is sponsored by:ThinkGeek > Welcome to geek heaven. > http://thinkgeek.com/sf > _______________________________________________ > PyMOL-users mailing list > PyMOL-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/pymol-users