Hi List! I finally got a Pymol script which does what I want, but I still have problems. I follows my actual script:
------------------------------------- del all mclear set cache_frames=0 set cartoon_fancy_helices, 1 load c1/forcedin.pdb,c1 frame 1 hide all run Pymol/stride_ss.py stride2pymol c1 stride2pymol c2 show sticks, (resi 199) show cartoon, all color red, c1 color blue, c2 set orthoscopic=1 viewport 640,480 run Pymol/eixos.py translate [18,18,20],object=axes run Pymol/cgotext.py translate [18,55.5,40],object=txt reset zoom all,-55 clip near,2 mset 1 x10 1 x72 -28 28 x72 28 x10 util.mroll(11,82,1) util.mroll(111,182,1) set antialias=1.0 set ray_trace_frames=1 mpng png2/mvc1e2 ------------------------------------------- It works for a 28 frames of MD. But a test. Extending it for a real MD (~500 frames) I found out that Pymol crashes when command 'show cartoon, all' is running (after done the half of frames, I believe). Problably memory problems, right? However a similar operation works fine in VMD (sorry for comparison). I use a P4 1.6 GHz with 256 Mb Ram. BTW, how could I insert in Pymol script (python language) such command bellow: mencoder \*.png -mf on:fps=30 -o mvc1ec2.avi -ovc lavc -lavcopts vcodec=mpeg4:vbitrate=6000:vhq:keyint=30 Thanks in advance for any help. Cheers, -- -------------------------- Alan Wilter Sousa da Silva -------------------------- B.Sc. - Dep. Física - UFPA M.Sc. - Dep. Física - PUC/RJ D.Sc. - IBCCF/UFRJ Bolsista Pesquisador LAC-INPE São José dos Campos (SP), Brasil www.lac.inpe.br/~alan
