Dear all,

I noticed that MacPyMOL (v0.95) or the X11 hybrid version (v0.95 and v0.96) crashes when aligning relatively large protein molecules (over 2,000 residues). After issuing the align command, the PyMOL process in the Activity Monitor turns red. This did not happen when I aligned smaller molecules (e.g. 200 residues). Is there a parameter I have to set before aligning large molecules in these versions? By the way, the alignment worked fine in the fink version (0.93) of PyMOL.

I appreciate any help.


Wataru Kagawa, Ph. D.
Postdoctoral Researcher
Protein Research Group
RIKEN (Physical and Chemical Research Institute)

W221, West Research Bldg.
1-7-22 Suehiro-cho, Tsurumi-ku
Yokohama, Japan 230-0045

tel.    045-503-9206
fax.    045-503-9201


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