I was looking for such a program couple of days ago, and I found "pass".
http://www.ccl.net/cca/software/UNIX/pass/overview.shtml I saw the cavities in couple of minutes in pymol :) I'm not familiar with voidoo, so I don't know if you will find this usefull or not... My current problem is related to this one, so I'll post it here also. I would like to calculate surface of the cavity with pymol and show this as a cavity going in to the protein. But the surface is all grey, because it is the "inside". Is there a way to map the colours also to the other side of the surface? best regards, ~Lari~ »»»»»»»»»»»»»»»»»»»»»»»»»»»»»»»»»»»»»»»»»» Lari Lehtiö University of Helsinki Institute of Biotechnology Macromolecular X-ray crystallography P.O.Box 65 00014 HY Finland »»»»»»»»»»»»»»»»»»»»»»»»»»»»»»»»»»»»»»»»»» Quoting Dirk Kostrewa <dirk.kostr...@psi.ch>: # Dear PyMol users, # # I'm looking for a program that can calculate and write out cavities in a # # format that can be converted such that I can display it with PyMol (I'm # not # satisfied with the results from VOIDOO). Could you please send me any # pointer # to a program that you found useful? BTW, this would be my wish for a # next # release of PyMol! # # Best regards, # # Dirk. # # -- # # **************************************** # Dirk Kostrewa # Paul Scherrer Institut # Life Sciences, OFLC/110 # CH-5232 Villigen PSI, Switzerland # Phone: +41-56-310-4722 # Fax: +41-56-310-5288 # E-mail: dirk.kostr...@psi.ch # http://sb.web.psi.ch # **************************************** # # # # ------------------------------------------------------- # This SF.Net email is sponsored by BEA Weblogic Workshop # FREE Java Enterprise J2EE developer tools! # Get your free copy of BEA WebLogic Workshop 8.1 today. # http://ads.osdn.com/?ad_id=4721&alloc_id=10040&op=click # _______________________________________________ # PyMOL-users mailing list # PyMOL-users@lists.sourceforge.net # https://lists.sourceforge.net/lists/listinfo/pymol-users #
