On Friday 23 July 2004 13:41, Dirk Kostrewa wrote: > I wanted to have a program that can easily calculate cavities in proteins > to be displayed with pymol (see e-mails below for details). > Thanks to Gareth and Lari I've got two pointers to such programs: > I've tried PASS, recommended by Lari and got a surface picture of my > cavities within literally a few minutes, as Lari already wrote.
The rTools (http://www.rubor.de/bioinf/pymol_rubor.html) also contain a fucntion to interface PASS with PyMOL. -- Lieven Buts Department of Ultrastructure Vrije Universiteit Brussel
