Hi Warren, Does this work with the transparency setting as well? I had a molecule that I wanted some sticks transparent to see behind them and other sticks solid. The only way I found to do this was to load the molecule twice and draw the transparent sticks from molecule 1 and the solid sticks from molecule 2. Does the create [object] command essentially load your molecule a second time?
Thanks, Chris On Thu, 19 Aug 2004, Warren DeLano wrote: >That's good advice, except that you'll lose any bonds between the two >selections... > >the following example will keep those bonds (by duplicating atoms) > >create protein2, (selection_1) >create protein3, ((not selection_1) extend 1) > >set line_width=1.2, protein2 >set line_width=2.0, protein3 > > >Cheers, >Warren > >PS. "extend" is relatively new selection operator... > >-- >mailto:war...@delsci.com >Warren L. DeLano, Ph.D. >Principal Scientist >DeLano Scientific LLC >Voice (650)-346-1154 >Fax (650)-593-4020 > > >> -----Original Message----- >> From: pymol-users-ad...@lists.sourceforge.net >> [mailto:pymol-users-ad...@lists.sourceforge.net] On Behalf Of >> Peter Haebel >> Sent: Thursday, August 19, 2004 10:35 AM >> To: pymol-users@lists.sourceforge.net >> Subject: Re: [PyMOL] line width >> >> Hi Brandon, >> >> how about creating two new objects.... >> >> create protein2, (selection_1) >> create protein3, (not selection_1) >> >> set line_width=1.2, protein2 >> set line_width=2.0, protein3 >> >> cheers >> >> peter >> >> >> On Thursday 19 August 2004 00:38, Brandon Hespenheide wrote: >> > Pymolers, >> > >> > Is it possible to create two, non-overlapping, selections of a >> > protein, and display them with different line-widths? I have tried >> > "set line_width=1.2, selection_1", but it applies the new >> line_width >> > to the entire protein instead of only selection_1. >> > >> > brandon >> >> -- >> ___________________________________________ >> >> Dr. Peter Haebel >> >> Philipps-Universität Marburg >> Institut für Pharmazeutische Chemie >> Marbacher Weg 6 >> D-35032 Marburg >> >> phone: +49-6421-28-25072 >> fax: +49-6421-28-28994 >> >> email: peter.hae...@staff.uni-marburg.de http://www.agklebe.de >> >> >> ------------------------------------------------------- >> SF.Net email is sponsored by Shop4tech.com-Lowest price on >> Blank Media 100pk Sonic DVD-R 4x for only $29 -100pk Sonic >> DVD+R for only $33 Save 50% off Retail on Ink & Toner - Free >> Shipping and Free Gift. >> http://www.shop4tech.com/z/Inkjet_Cartridges/9_108_r285 >> _______________________________________________ >> PyMOL-users mailing list >> PyMOL-users@lists.sourceforge.net >> https://lists.sourceforge.net/lists/listinfo/pymol-users >> > > > > >------------------------------------------------------- >SF.Net email is sponsored by Shop4tech.com-Lowest price on Blank Media >100pk Sonic DVD-R 4x for only $29 -100pk Sonic DVD+R for only $33 >Save 50% off Retail on Ink & Toner - Free Shipping and Free Gift. >http://www.shop4tech.com/z/Inkjet_Cartridges/9_108_r285 >_______________________________________________ >PyMOL-users mailing list >PyMOL-users@lists.sourceforge.net >https://lists.sourceforge.net/lists/listinfo/pymol-users > Christopher L. Colbert, Ph.D. Research Associate Howard Hughes Medical Institute Phone: (214) 648 5002 University of Texas Southwestern Medical Center FAX: (214) 648 5095 5323 Harry Hines Boulevard Dallas, TX 75390
