Eric, PyMOL loads multi-model PDB, SDF, or MOL2 files as movies. You can use the VCR conrols/arrow keys to iterate through them. Alternatively, you can use the split_states command to create single objects out of each state.
load multimod.mol2 split_states multimod I'm not sure if 0.97 will get the ligand names right from the MOL2, but the latest windows beta should: http://delsci.com/beta Cheers, Warren -- mailto:war...@delsci.com Warren L. DeLano, Ph.D. Principal Scientist DeLano Scientific LLC Voice (650)-346-1154 Fax (650)-593-4020 > -----Original Message----- > From: pymol-users-ad...@lists.sourceforge.net > [mailto:pymol-users-ad...@lists.sourceforge.net] On Behalf Of > Peterson, Eric C > Sent: Thursday, September 23, 2004 6:59 AM > To: pymol-users@lists.sourceforge.net > Subject: [PyMOL] Opening FlexX multi files > > Pymolers, > > > > I am using Sybyl/Flexx to do some theoretical docking of a > small molecule into an antibody binding site. FlexX > generates a single .mol2 file with all of the docking > configurations that were generated, called a multi file. In > Sybyl, all of these configurations appear when the file is > opened. However, when I open this file in Pymol only the > first configuration appears. Is there any way for Pymol to > read this multi file, or do I have to separate all of the > configurations into individual files? Thanks. > > > > Eric > > > > __________________________________ > > Eric Peterson, Ph.D > > Department of Pharmacology > > University of Arkansas for Medical Sciences > > 4301 W. Markham Rd. #611 > > Little Rock, AR 72205 > > Phone: (501) 686-5513 > > Fax: (501) 686-5521 > > > > --------------------------------- > > Confidentiality Notice: This e-mail message, including any > attachments, is for the sole use of the intended recipient(s) > and may contain confidential and privileged information. Any > unauthorized review, use, disclosure or distribution is > prohibited. If you are not the intended recipient, please > contact the sender by reply e-mail and destroy all copies of > the original message. > >
