Oops. I actually used mapmask to extend the map over the unit cell.
Apologies.
Jacob Corn wrote:
This question was posted by someone else in January, but no solution was
ever described. I'm currently running up against the same problem and
would very much like to know if there is a solution, or if I'm stuck in
bug-land.
I have several CCP4 maps that have been calculated over the entire unit
cell (using ccp4's "extend") that can be read in, but only displayed in
a rectangle covering ~1/3 of the unit cell. Unfortunately, my molecule
does not lie within that 1/3. Converting the ccp4 maps to other formats
(xplor, omap, etc.) does not solve the problem.
Is there a way to get pymol to re-center the contouring around my
molecule? Trying to use isomesh or the density wizard to carve around
selections only results in "Surface generated using 0 lines". Putting up
the entire map shows the aforementioned rectangle.
Why are unit-cell-wide maps only displayed over part of the unit cell?
Jacob
--
Jacob Corn
UC Berkeley - Berger Lab
Lab: 510-643-8893
Fax: 510-643-9290
jc...@uclink.berkeley.edu
