> > only the portion of the fitted density map that is located at a > > defined distance from my selection?
This is what the carve option to isosurface and isomesh do: isomesh mesh-name, map-name, level, selection, carve=distance load map1.xplor load ref.pdb zoom ref and resn LIG, 3 isomesh mesh1, map1, 1.0, ref and resn LIG, carve=2.1 Cheers, Warren -- Warren L. DeLano, Ph.D. Principal Scientist . DeLano Scientific LLC . 400 Oyster Point Blvd., Suite 213 . South San Francisco, CA 94080 . Biz:(650)-872-0942 Tech:(650)-872-0834 . Fax:(650)-872-0273 Cell:(650)-346-1154 . mailto:war...@delsci.com > -----Original Message----- > From: pymol-users-ad...@lists.sourceforge.net > [mailto:pymol-users-ad...@lists.sourceforge.net] On Behalf Of > Jason Thomas Maynes > Sent: Monday, February 07, 2005 1:00 PM > To: Stefano Marzi > Cc: pymol-users@lists.sourceforge.net > Subject: Re: [PyMOL] cut-off distance > > show sticks, [selection] around [angstoms] > > or more usefully: > > show sticks, byres [selection] around [angstoms] > > You can load a map in a similiar manner. > > This is also in the manual so I would suggest looking there > first, it's quicker than waiting for a list reply. > > Cheers, > JTM > > > "We can be sure that if a detailed understanding of the > molecular basis of chemo-therapeutic activity were to be > obtained, the advance of medicine would be greatly accelerated." > > Linus Pauling, Nobel Laureate 1954 > > "...everything that living things do can be understood in > terms of the jigglings and wigglings of atoms." > > Richard Feynman, Nobel Laureate 1965 > > ************************* > Jason Thomas Maynes > PhD/MD Program > Department of Biochemistry > Faculty of Medicine > University of Alberta > ja...@biochem.ualberta.ca > ************************* > > ----- Original Message ----- > From: Stefano Marzi <stefano.ma...@unicam.it> > Date: Monday, February 7, 2005 8:09 am > Subject: [PyMOL] cut-off distance > > > Hi, > > Does anybody knows if PyMol is implemented with a cut-off distance > > feature, i.e. if I can select some atoms on my structure > and visualize > > only the portion of the fitted density map that is located at a > > defined distance from my selection? > > Thank you > > Stefano > > > > __________________________________________________________ > > Stefano Marzi, Ph.D. > > Lab. di Genetica > > Dip. Biologia M.C.A. e-mail: stefano.ma...@unicam.it > > Universita' di Camerino > > 62032 Camerino, Italy > > > > > > ------------------------------------------------------- > > This SF.Net email is sponsored by: IntelliVIEW -- Interactive > > ReportingTool for open source databases. Create drag-&-drop > reports. > > Save time by over 75%! Publish reports on the web. Export > to DOC, XLS, > > RTF, etc. > > Download a FREE copy at http://www.intelliview.com/go/osdn_nl > > _______________________________________________ > > PyMOL-users mailing list > > PyMOL-users@lists.sourceforge.net > > https://lists.sourceforge.net/lists/listinfo/pymol-users > > > > > > ------------------------------------------------------- > SF email is sponsored by - The IT Product Guide Read honest & > candid reviews on hundreds of IT Products from real users. > Discover which products truly live up to the hype. Start reading now. > http://ads.osdn.com/?ad_id=6595&alloc_id=14396&op=click > _______________________________________________ > PyMOL-users mailing list > PyMOL-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/pymol-users >
