Thanks a tonne!!!
It worked
so I did
ffout=open('secstruc.txt','w')
iterate name ca, ffout.write(repr((chain, resi, ss)))
ffout.close()
And the file was written to the pymol install directory..
This has convinced me of the power of pymols design and python in
general..lots of learning to do.
Thanks again
Hari Jayaram
Brandeis University
On 6/17/05, T.A.Wassenaar <t.a.wassen...@rug.nl> wrote:
>
>
>
> I think you can try:
>
> ffout=open('secstruc.txt','w')
> iterate name ca, ffout.write(repr((chain, resi, ss)))
>
> Hope it works, but otherwise Warren will correct me :)
>
> Tsjerk
>
> On Fri, 17 Jun 2005 11:12:53 -0400
> hari jayaram <hari...@gmail.com> wrote:
> > I am sorry for being so needy ..Is there a way to
> >quickly write this out to
> > a file..I am a total python non savant and I have spent
> >the last hour
> > struggling with file open and write commands and gotten
> >nowhere.
> > So how do I write out the result of
> >
> > iterate name ca, print chain,resi,ss
> >
> > to a file .
> >
> > Thanks again
> > Hari Jayaram
> > Brandeis University
> >
> >
> > On 6/17/05, Warren DeLano <war...@delsci.com> wrote:
> >>
> >> iterate name ca, print chain,resi,ss
> >>
> >>
> >> --
> >> Warren L. DeLano, Ph.D.
> >> Principal Scientist
> >>
> >> . DeLano Scientific LLC
> >> . 400 Oyster Point Blvd., Suite 213
> >> . South San Francisco, CA 94080 USA
> >> . Biz:(650)-872-0942 Tech:(650)-872-0834
> >> . Fax:(650)-872-0273 Cell:(650)-346-1154
> >> . mailto:war...@delsci.com
> >>
> >>
> >> > -----Original Message-----
> >> > From: pymol-users-ad...@lists.sourceforge.net
> >> > [mailto:pymol-users-ad...@lists.sourceforge.net] On
> >>Behalf Of
> >> > hari jayaram
> >> > Sent: Friday, June 17, 2005 5:33 AM
> >> > To: pymol-users@lists.sourceforge.net
> >> > Subject: [PyMOL] how to get pymol sec structure
> >>assignments
> >> > printed out
> >> >
> >> > Hi
> >> > I was just wondering how to get the pymol secondary
> >>structure
> >> > assignments printed out .
> >> > I was looking to manually do this for all the helix
> >>and
> >> > strand starts and stops..but I was wondering if there
> >>is some
> >> > way to have it print to the screen or a file the
> >>assignments
> >> > it uses for the cartoons...
> >> > like
> >> > helix from A1 to A50 ..
> >> >
> >> > Thanks for your help in advance
> >> > Hari Jayaram
> >> > Brandeis University
> >> >
> >> >
> >>
>
>
