> I beleive the mutagensis wizard in the newer ( > 0.98) will > incorporate the Dunbrack library in some way or another.
Indeed: the mutagenesis wizard in the latest betas incorporates the full bb-independent rotamer library and a sampled subset of the bb-dependent library covering populated regions of ramachandran space. http://delsci.com/beta Cheers, Warren -- Warren L. DeLano, Ph.D. Principal Scientist . DeLano Scientific LLC . 400 Oyster Point Blvd., Suite 213 . South San Francisco, CA 94080 USA . Biz:(650)-872-0942 Tech:(650)-872-0834 . Fax:(650)-872-0273 Cell:(650)-346-1154 . mailto:war...@delsci.com > -----Original Message----- > From: pymol-users-ad...@lists.sourceforge.net > [mailto:pymol-users-ad...@lists.sourceforge.net] On Behalf Of Dan Kulp > Sent: Thursday, September 08, 2005 9:31 AM > To: Xavier Deupi > Cc: pymol-users@lists.sourceforge.net > Subject: Re: [PyMOL] conformational states in the mutagenesis wizard > > Hey, > The rotamer toggle script originally loaded the Dunbrack > Backbone-Dependent rotamer library upon PyMOL startup. > However, I've changed it so that it will get loaded the first > time you try to access the rotamer menu instead. The code is > fixed on www.PyMOLwiki.org . Now PyMOL will start at regular > speed. Thanks for the catching the 'bug' Xavier. > > I beleive the mutagensis wizard in the newer ( > 0.98) will > incorporate the Dunbrack library in some way or another. > > ~Dan Kulp > > Xavier Deupi wrote: > > > Hi, > > > > I've just realized that through the mutagenesis wizard you can > > view/select different conformations for a sidechain. I've > been playing > > around, and it seems that the conformations are selected > according to > > a backbone-independent rotamer library. Am I correct? Which library > > has been used? > > > > I would also like to know if there is anybody out there using the > > rotamer toggle plugin. I've just installed it, and although > it seems > > extremely useful, it makes PyMOL very slow to start. I'm > running PyMOL > > 0.98 for MacOSX in a PowerBook G4 1GHz with 1Gb of RAM > (running MacOS > > X 10.4.2) > > > > Thanks in advance, > > > > Xavier > > > > > -- > Dan Kulp > Biophysics Graduate Student @ UPenn > dwk...@mail.med.upenn.edu > http://dwkulp.homelinux.net/tiki/tiki-index.php > -- > > > > ------------------------------------------------------- > SF.Net email is Sponsored by the Better Software Conference & > EXPO September 19-22, 2005 * San Francisco, CA * Development > Lifecycle Practices Agile & Plan-Driven Development * > Managing Projects & Teams * Testing & QA Security * Process > Improvement & Measurement * http://www.sqe.com/bsce5sf > _______________________________________________ > PyMOL-users mailing list > PyMOL-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/pymol-users > > >
