Shiven Shandilya wrote:
On 10/15/06, *Margaret Luk-Paszyc* <m...@pharm.stonybrook.edu
<mailto:m...@pharm.stonybrook.edu>> wrote:
Hello --
Can someone please advise me?
I'm a new user of PyMol trying to get the kabsch alignment
script to work. I only installed the main pymol installer
(v 0.99r6), and I have copied the kabsch.py script as the
wiki said. However, I can't find this Numeric.py you are
referring to in the wiki... The wiki infers that the
Numeric.py script is a native part of the installer, but I
don't seem to have it in my folders anywhere. Obviously,
kabsch doesn't want to run either. I am running PyMol
v0.99r6 on RHE4 (intel32).
Hi Maggie,
Numeric.py is usually located (on Windows platforms) under
"C:\Program Files\DeLano Scientific\PyMOL\modules\Numeric"
<snip>
Thank you for your help, but I think you misunderstood my post. As I
said, I am using Linux (red hat enterprise edn v4), not Windows. And at
least in the Linux distro of PyMol, there is no numeric.py in any of the
subfolders. My guess is that the numeric.py is required for the window
install, but I just don't know. The wiki also says that this works for
all installs of PyMol 0.97 and greater, but it looks like the page was
written a while ago and something may have changed in v0.99.
Any more suggestions from the lot? :)
Your desperate-to-align-in-PyMol-user,
Maggie L.-P.
