can you get a surface for the protein-ligand complex?
cheers, nick -----Original Message----- From: Simon Holton <[email protected]> To: "Andrew Colasanti" <[email protected]> Date: Thu, 2 Nov 2006 15:36:55 +0100 Subject: Re: [PyMOL] Ligand Surface Representation Maybe it wasn't clear from my original email, but I did try making a new object for the ligand and one for the 'empty' protein, but this doesn't help :-( Simon On Nov 2, 2006, at 3:19 PM, Andrew Colasanti wrote: > Did you create a new object for the ligand? Try creating 2 objects, > one for ligand and one for protein w/o ligand. > > Andrew > > > On 11/2/06, Simon Holton <[email protected]> wrote: >> Hi Folks, >> >> I'm trying to generate a surface for a ligand which is >> part of a >> ligand-protein complex. I realise this is the other way around to >> normal, but somehow when I select the ligand in pymol and then 'show >> surface, ligand', absolutely nothing happens. No error, but no >> surface. The same happens if I just open a pdb file describing the >> ligand alone. Other representations work, but the problem is not PDB >> specific. I'm using the macpymol X11 hybrid (0.98) >> >> Any suggestions? >> >> Cheers >> >> SImon >> >> --------------------------------------------------------------------- >> ---- >> Using Tomcat but need to do more? Need to support web services, >> security? >> Get stuff done quickly with pre-integrated technology to make your >> job easier >> Download IBM WebSphere Application Server v.1.0.1 based on Apache >> Geronimo >> http://sel.as-us.falkag.net/sel? >> cmd=lnk&kid=120709&bid=263057&dat=121642 >> _______________________________________________ >> PyMOL-users mailing list >> [email protected] >> https://lists.sourceforge.net/lists/listinfo/pymol-users >> > > ---------------------------------------------------------------------- > --- > Using Tomcat but need to do more? Need to support web services, > security? > Get stuff done quickly with pre-integrated technology to make your > job easier > Download IBM WebSphere Application Server v.1.0.1 based on Apache > Geronimo > http://sel.as-us.falkag.net/sel? > cmd=lnk&kid=120709&bid=263057&dat=121642 > _______________________________________________ > PyMOL-users mailing list > [email protected] > https://lists.sourceforge.net/lists/listinfo/pymol-users ------------------------------------------------------------------------- Using Tomcat but need to do more? Need to support web services, security? Get stuff done quickly with pre-integrated technology to make your job easier Download IBM WebSphere Application Server v.1.0.1 based on Apache Geronimo http://sel.as-us.falkag.net/sel?cmd=lnk&kid=120709&bid=263057&dat=121642 _______________________________________________ PyMOL-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/pymol-users ________________________________________ Nicholas Noinaj University of Kentucky College of Medicine Department of Molecular and Cellular Biochemistry The Center for Structural Biology Biomedical Biological Sciences Research Building, Rm 236 741 S. Limestone Lexington, Ky 40536 Lab: 859-323-8183 Cell: 859-893-4789 Home: 859-228-0978 [email protected] noinaj.com
