Alan, Hmm...the Darwin "setup.py" build is definitely broken...I'll need to look into why -- it shouldn't be trying to link to any MacPyMOL symbols (MacPyMOL is beyond the scope of the open-source project).
In the meantime, you can probably try an in-place autotools-based compile instead. ./configure make make install Note that "make install" just installs into the current source directory. As for the Fink build, that looks like an X11 / OpenGL / GLX problem on your system. Does the precompiled X11 build work? Cheers, Warren -- DeLano Scientific LLC Subscriber Support Services mailto:del...@delsci.info "Not yet a PyMOL Subscriber, but want to support the project? Email sa...@delsci.com to quote your lab, school, or employer. Thank you for sponsoring this open-source endeavor!" -WLD > -----Original Message----- > From: pymol-users-boun...@lists.sourceforge.net > [mailto:pymol-users-boun...@lists.sourceforge.net] On Behalf Of Alan > Sent: Wednesday, June 27, 2007 4:46 AM > To: Pymol > Subject: [PyMOL] compiling pymol on Mac intel > > Hi List! > > I am trying to compile pymol via 2 ways on my Macbook pro Intel: > > 1) Via fink: > fink install pymol-py24 > (installs version 0.99-1005) > > All seems to be ok, but when running > /sw/lib/pymol-py24/bin/pymol, I got this: > X Error of failed request: BadAlloc (insufficient resources > for operation) > Major opcode of failed request: 150 (GLX) > Minor opcode of failed request: 3 (X_GLXCreateContext) > Serial number of failed request: 19 > Current serial number in output stream: 20 > PyMOL: abrupt program termination. > > 2) Via SVN Pymol 1.0 > python setup.py build > > Failed with: > > [...] > gcc -fno-strict-aliasing -Wno-long-double -no-cpp-precomp > -mno-fused-madd -DNDEBUG -g -O3 -Wall -Wstrict-prototypes > -D_PYMOL_MODULE -D_PYMOL_OSX -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 > -Ilayer3 -Ilayer4 -Ilayer5 > -I/System/Library/Frameworks/OpenGL.framework/Headers > -I/System/Library/Frameworks/GLUT.framework/Headers > -I/System/Library/Frameworks/CoreFoundation.framework/Headers > -I/System/Library/Frameworks/AppKit.framework/Headers > -I/System/Library/Frameworks/ApplicationServices.framework/Headers > -I/System/Library/Frameworks/Cocoa.framework/Headers > -I/System/Library/Frameworks/IOKit.framework/Headers > -I/sw/include/python2.4 -c layer5/main.c -o > build/temp.darwin-8.10.1-i386-2.4/layer5/main.o > In file included from layer0/os_gl.h:44, > from layer5/main.c:27: > /System/Library/Frameworks/OpenGL.framework/Headers/glu.h:269: > warning: function declaration isn't a prototype > /System/Library/Frameworks/OpenGL.framework/Headers/glu.h:281: > warning: function declaration isn't a prototype > /System/Library/Frameworks/OpenGL.framework/Headers/glu.h:290: > warning: function declaration isn't a prototype > layer5/main.c: In function 'launch': > layer5/main.c:1484: error: 'MacPyMOLOption' undeclared (first > use in this function) > layer5/main.c:1484: error: (Each undeclared identifier is > reported only once > layer5/main.c:1484: error: for each function it appears in.) > layer5/main.c:1485: error: 'MacPyMOLReady' undeclared (first > use in this function) > error: command 'gcc' failed with exit status 1 > > I am using: > ri python24 2.4.3-1001 Interpreted, > object-oriented language > ii python24-shlib 2.4.3-1001 Interpreted, > object-oriented language > > ii freeglut 2.4.0-1 Opengl utility toolkit > ii freeglut-shlib 2.4.0-1 Opengl utility toolkit > ii glut-shlibs 3.7-1025 Opengl utility toolkit > > ii libpng3 1.2.18-1 PNG image format handling library > ii libpng3-shlibs 1.2.18-1 Shared libraries for libpng3 package > > ii tcltk 8.4.13-3 Tool Command Language and > the Tk toolkit > ii tcltk-dev 8.4.13-3 Tool Command Language and > the Tk toolkit > ii tcltk-shlibs 8.4.13-3 Tool Command Language and > the Tk toolkit > > ii freetype2 2.1.4-12 TrueType font rendering > library, (dummy) > ii freetype219 2.2.1-4 TrueType font rendering > library, headers > ii freetype219-sh 2.2.1-4 TrueType font rendering > library, shared libs > > And MacOSX OpenGL. > > I also tried with python 2.4.3 OSX Framework version, same error. > > My guess is it's trying to install MacPymol, but I don't know > if I am even allowed (although I use pymol only visualisation > and have several scripts written for it). Otherwise, how to > tell setup to install pymol for X11? If I can use MacPymol > (and compile it), that's would be great. > > So, any hint here would be very appreciated. > > Many thanks in advance. > Cheers, > Alan > -- > Alan Wilter S. da Silva, D.Sc. - CCPN Research Associate > Department of Biochemistry, University of Cambridge. > 80 Tennis Court Road, Cambridge CB2 1GA, UK. > >>http://www.bio.cam.ac.uk/~awd28<< > > -------------------------------------------------------------- > ----------- > This SF.net email is sponsored by DB2 Express > Download DB2 Express C - the FREE version of DB2 express and take > control of your XML. No limits. Just data. Click to get it now. > http://sourceforge.net/powerbar/db2/ > _______________________________________________ > PyMOL-users mailing list > PyMOL-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/pymol-users
