Hurrah! It's working, even X11, all fine. Thanks a lot Warren.
Cheers, Alan On 02/07/07, DeLano Scientific <del...@delsci.info> wrote:
Alan, svn update and try rebuilding. The problem was that the existing setup.py was still linking against Apple-provided Python as opposed to Fink Python. Also note that I've added some additional defines so that you'll be able to save images and use scalable fonts. See setup.py for a full list of the Fink dependencies required. Cheers, Warren -- DeLano Scientific LLC Subscriber Support Services mailto:del...@delsci.info "Not yet a PyMOL Subscriber, but want to support the project? Email sa...@delsci.com to quote your lab, school, or employer. Thank you for sponsoring this open-source endeavor!" -WLD > -----Original Message----- > From: pymol-users-boun...@lists.sourceforge.net > [mailto:pymol-users-boun...@lists.sourceforge.net] On Behalf Of Alan > Sent: Monday, July 02, 2007 12:43 PM > To: Pymol; Warren DeLano > Subject: [PyMOL] compiling pymol on Mac intel > > Thanks Warren, > > I update from pymol from SVN and to python2.5 (Fink), then : > > python2.5 setup.py build [OK] > sudo python2.5 setup.py install [OK] > sudo python2.5 setup2.py install [OK] > > Then: > ./pymol failed with: > > Fatal Python error: Interpreter not initialized (version mismatch?) > ./pymol: line 2: 9512 Abort trap /sw/bin/python2.5 > /sw/lib/python2.5/site-packages/pymol/__init__.py $* > > [all process above with python2.4] > Fatal Python error: Interpreter not initialized (version mismatch?) > pymol: line 2: 6249 Abort trap /sw/bin/python2.4 > /sw/lib/python2.4/site-packages/pymol/__init__.py $* > > trying with pymol-py24 or pymol-py25 from Fink (1.0-1000) > gave this error: > > X Error of failed request: BadAlloc (insufficient resources > for operation) > Major opcode of failed request: 150 (GLX) > Minor opcode of failed request: 3 (X_GLXCreateContext) > Serial number of failed request: 19 > Current serial number in output stream: 20 > PyMOL: abrupt program termination. > > I must say that I never ever had problems running any X11 > application in my Mac, only pymol from Fink shows that. > > If I use pymol -c build_pep2.py (no X), it works fine. > > I hope I can find a solution. > > Cheers, > Alan > > On 27/06/07, DeLano Scientific <del...@delsci.info> wrote: > > Alan, > > > > Okay, I found the glitch with the OSX defines -- my bad. > > > > However, I also rediscovered what the hidden difficultly is with > > compiling PyMOL under X11, and that is: Mac OS X's built-in > python has > > an Aqua-based Tcl/Tk/Tkinter implementation NOT bound to > X11 and which > > does not work with PyMOL due to conflicts in the threading > and event model. > > > > So to compile PyMOL for X11 on Mac OS X, one needs a separate > > Python/Tcl/Tk/Tkinter instance that has been built for X11. > Where you > > do get that? Fink. > > > > So the bottom line message is: Open-source PyMOL for X11 > under Mac OS > > X must be compiled under the Fink environment, not straight > Mac OS X. > > We need to fix the default setup.py to reflect this fact. > > > > Cheers, > > Warren > > > -- > Alan Wilter S. da Silva, D.Sc. - CCPN Research Associate > Department of Biochemistry, University of Cambridge. > 80 Tennis Court Road, Cambridge CB2 1GA, UK. > >>http://www.bio.cam.ac.uk/~awd28<< > > > -- > Alan Wilter S. da Silva, D.Sc. - CCPN Research Associate > Department of Biochemistry, University of Cambridge. > 80 Tennis Court Road, Cambridge CB2 1GA, UK. > >>http://www.bio.cam.ac.uk/~awd28<< > > -------------------------------------------------------------- > ----------- > This SF.net email is sponsored by DB2 Express > Download DB2 Express C - the FREE version of DB2 express and take > control of your XML. No limits. Just data. Click to get it now. > http://sourceforge.net/powerbar/db2/ > _______________________________________________ > PyMOL-users mailing list > PyMOL-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/pymol-users
-- Alan Wilter S. da Silva, D.Sc. - CCPN Research Associate Department of Biochemistry, University of Cambridge. 80 Tennis Court Road, Cambridge CB2 1GA, UK.
http://www.bio.cam.ac.uk/~awd28<<
