Bonetti, Try specifying either only the width or only the height to "ray", and change the shape of the window to match the desired output image. Specifying both width and height can force PyMOL to change the camera view, which may result in getting something not WYSIWYG (what you see is what you get) with respect to the OpenGL view.
Cheers, Warren -- DeLano Scientific LLC Subscriber Support Services mailto:[email protected] "Not yet a PyMOL Subscriber, but want to support the project? Email [email protected] to quote your lab, school, or employer. Thank you for sponsoring this open-source endeavor!" -WLD ________________________________ From: [email protected] [mailto:[email protected]] On Behalf Of Bonetti Cosimo Sent: Thursday, October 11, 2007 11:49 PM To: [email protected] Subject: [PyMOL] png Hi everybody, I have a problem when i create a png, after making some changes to the protein file( selecting one part of the aminoacid and overimposing the catoon) I esecute this script ray 487,542 png Lhalf.png, dpi=300 and i got something UGLY (cartoon is not present in the final picture and the border of the selected aminoacids are black and not continous) but when i run the same script on another protein conformation (prepared in the same way) i got extly what i want (NICE selected part with the cartoon in grey evident in trasparence) where is the mistake? thanks -- Mr. Cosimo Bonettiselected Section of Biophysics Vrije Universiteit Amsterdam De Boelelaan 1081 1081 HV, Amsterdam - The Netherlands Room: S1.48 Phone: +31(0)20 598 7932 Fax : +31 (0)20 598 7999 E-mail : [email protected] [email protected] ============================= Float like a butterfly Sting like a bee! [Muhammad Ali] ================================= work hard, play harder, sleep later winners do not think about the finish line they just love to run ======================== "To make a bad day worse, spend it wishing for the impossible." "I don't know which is worse, ...that everyone has his price, or that the price is always so low." -Calvin =============================
