Mark, It sounds like the sglite module may not have compiled correctly.
Cheers, Warren -- DeLano Scientific LLC Subscriber Support Services mailto:del...@delsci.info > -----Original Message----- > From: pymol-users-boun...@lists.sourceforge.net > [mailto:pymol-users-boun...@lists.sourceforge.net] On Behalf > Of Mark Wehner > Sent: Saturday, January 12, 2008 4:07 AM > To: pymol-users@lists.sourceforge.net > Subject: [PyMOL] Problems with space group recognition > > Dear Pymol users & staff, > > I'm facing a problem with the recognition of space groups > from (once working) valid pdb files with the last three or > maybe 4 versions of Pymol. If I load any (all space groups I > tested failed!) pdb file I'm able to use all features except > those that are symmetry-related; especially I need to > generate symmetry mates for certain proteins. The output is > already pointing to an error, but I can't find the error in > the source code... > > Output: > 'ObjectMolecule: Read crystal symmetry information. > Symmetry-Error: Urecognized space group symbol 'C 1 2 1'. > Symmetry-Error: Unable to get matrices from sglite. > CmdLoad: "pdb/1f5n.pdb" loaded as "1f5n".' > > I'm using Gentoo Linux and compiled against Python 2.5 using > gcc-4.1.2 on a 64-bit architecture (not using too much > optimization [-Os]). > > Any help on this would be greatly appreciated. Thanks in advance. > Mark Wehner > > -------------------------------------------------------------- > ----------- > Check out the new SourceForge.net Marketplace. > It's the best place to buy or sell services for just about > anything Open Source. > http://ad.doubleclick.net/clk;164216239;13503038;w?http://sf.n et/marketplace > _______________________________________________ > PyMOL-users mailing list > PyMOL-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/pymol-users
