pymol-users

Messages by Date

2020/07/05 Re: [PyMOL] cmd.get_fastastr() Thomas Holder
2020/07/05 Re: [PyMOL] Running PyMol (Linux) on Chromebook Wink, Donald J
2020/07/05 Re: [PyMOL] Running PyMol (Linux) on Chromebook J.R. W
2020/07/05 Re: [PyMOL] Multi sequence edition simultaneously sepehr dejdar
2020/07/05 Re: [PyMOL] Running PyMol (Linux) on Chromebook Jordan Willis
2020/07/05 [PyMOL] Running PyMol (Linux) on Chromebook Wink, Donald J
2020/07/05 [PyMOL] Multi sequence edition simultaneously sepehr dejdar
2020/07/05 Re: [PyMOL] Radius of gyration of a trimer Pedro Lacerda
2020/07/05 Re: [PyMOL] Radius of gyration of a trimer Pedro Lacerda
2020/07/05 [PyMOL] Radius of gyration of a trimer Dr. Subramanian, Senthil Kumar
2020/07/04 [PyMOL] cmd.get_fastastr() Pedro Lacerda
2020/07/03 Re: [PyMOL] extract monomer from trimer structure Tamas Hegedus
2020/07/03 [PyMOL] extract monomer from trimer structure Dr. Subramanian, Senthil Kumar
2020/07/03 [PyMOL] Question about multi-sequence edition in PyMOL sepehr dejdar
2020/07/03 Re: [PyMOL] Question about python commands in PyMOL Ali Kusay
2020/07/02 [PyMOL] Mutagenesis function not working patricia
2020/07/02 [PyMOL] Which 3D setup for a new installation? (Since 3D Vision is discontinued) David Krause
2020/07/02 Re: [PyMOL] [EXTERNAL] Question about python commands in PyMOL Mooers, Blaine H.M. (HSC)
2020/07/02 [PyMOL] Question about python commands in PyMOL Hrutvik Bhavsar
2020/06/28 [PyMOL] translate command after reorienting molecule Daniel Burns
2020/06/24 Re: [PyMOL] 13th CCP4/APS Crystallographic School in the US Xu, Qingping via PyMOL-users
2020/06/24 Re: [PyMOL] Python script with iterate_state and selection command ABEL Stephane
2020/06/23 [PyMOL] Question: How can I analyze the binding strength/energy between a small molecule and DNA using Pymol? Alexander Richardson
2020/06/23 Re: [PyMOL] Install license file from CLI Antonio Serrano
2020/06/23 Re: [PyMOL] transparent electron density silhouette Ali Kusay
2020/06/23 Re: [PyMOL] transparent electron density silhouette Thomas Holder
2020/06/23 Re: [PyMOL] Python script with iterate_state and selection command Thomas Holder
2020/06/22 Re: [PyMOL] Python script with iterate_state and selection command ABEL Stephane
2020/06/22 Re: [PyMOL] Python script with iterate_state and selection command Pedro Lacerda
2020/06/22 [PyMOL] Python script with iterate_state and selection command ABEL Stephane
2020/06/22 Re: [PyMOL] Install license file from CLI Thomas Holder
2020/06/22 Re: [PyMOL] Install license file from CLI Antonio Serrano
2020/06/21 Re: [PyMOL] [EXTERNAL] Valence_Mode issue Dr. Vijay Masand
2020/06/21 Re: [PyMOL] [EXTERNAL] Valence_Mode issue Mooers, Blaine H.M. (HSC)
2020/06/19 Re: [PyMOL] Install license file from CLI Thomas Holder
2020/06/19 Re: [PyMOL] Install license file from CLI Antonio Serrano
2020/06/18 [PyMOL] transparent electron density silhouette Daniel P Farrell
2020/06/18 Re: [PyMOL] Install license file from CLI Thomas Holder
2020/06/18 Re: [PyMOL] Install license file from CLI Antonio Serrano
2020/06/18 [PyMOL] color by index Chen, Qiang
2020/06/18 Re: [PyMOL] Install license file from CLI Thomas Holder
2020/06/17 [PyMOL] help Vertika Gautam
2020/06/17 [PyMOL] Color by index Vertika Gautam
2020/06/17 Re: [PyMOL] Effect of different align method Robert Campbell
2020/06/17 Re: [PyMOL] hydrogen bond list for a series of files Robert Campbell
2020/06/17 [PyMOL] Write the number of molecules for each state in a file ABEL Stephane
2020/06/17 [PyMOL] Install license file from CLI Antonio Serrano
2020/06/17 Re: [PyMOL] Effect of different align method sunyeping via PyMOL-users
2020/06/17 Re: [PyMOL] APBS plugin for Sugars Mario Garcia Urena
2020/06/16 [PyMOL] Effect of different align method sunyeping via PyMOL-users
2020/06/16 Re: [PyMOL] hydrogen bond list for a series of files Mooers, Blaine H.M. (HSC)
2020/06/16 [PyMOL] hydrogen bond list for a series of files Chen, Qiang
2020/06/16 Re: [PyMOL] hydrogen bond list for a series of files Chen, Qiang
2020/06/16 Re: [PyMOL] hydrogen bond list for a series of files Mooers, Blaine H.M. (HSC)
2020/06/16 Re: [PyMOL] Renumber Oganesyan, Vaheh
2020/06/16 Re: [PyMOL] hydrogen bond list for a series of files Chen, Qiang
2020/06/16 Re: [PyMOL] hydrogen bond list for a series of files Mooers, Blaine H.M. (HSC)
2020/06/15 [PyMOL] Antwort: PyMOL-users Digest, Vol 169, Issue 20 honegger
2020/06/15 Re: [PyMOL] Renumber honegger
2020/06/15 Re: [PyMOL] hydrogen bond list for a series of files Chen, Qiang
2020/06/15 Re: [PyMOL] hydrogen bond list for a series of files Mooers, Blaine H.M. (HSC)
2020/06/15 Re: [PyMOL] renumber Oganesyan, Vaheh
2020/06/15 Re: [PyMOL] renumber Jared Sampson
2020/06/15 Re: [PyMOL] renumber Mooers, Blaine H.M. (HSC)
2020/06/15 [PyMOL] hydrogen bond list for a series of files Chen, Qiang
2020/06/15 Re: [PyMOL] renumber (Oganesyan, Vaheh) Chen, Qiang
2020/06/15 Re: [PyMOL] renumber Oganesyan, Vaheh
2020/06/15 Re: [PyMOL] renumber Jared Sampson
2020/06/15 Re: [PyMOL] renumber Mooers, Blaine H.M. (HSC)
2020/06/15 Re: [PyMOL] renumber Oganesyan, Vaheh
2020/06/15 Re: [PyMOL] renumber Mooers, Blaine H.M. (HSC)
2020/06/15 Re: [PyMOL] renumber Oganesyan, Vaheh
2020/06/15 Re: [PyMOL] renumber Jarrett Johnson
2020/06/15 [PyMOL] renumber Oganesyan, Vaheh
2020/06/15 Re: [PyMOL] User data Thomas Holder
2020/06/15 Re: [PyMOL] APBS plugin for Sugars Thomas Holder
2020/06/14 [PyMOL] APBS plugin for Sugars Mario Garcia Urena
2020/06/10 Re: [PyMOL] PyMOL-users Digest, Vol 169, Issue 9 Len Banaszak via PyMOL-users
2020/06/09 Re: [PyMOL] ramachandran plots Pedro Lacerda
2020/06/09 [PyMOL] ramachandran plots Thomas Charles Pochapsky
2020/06/09 [PyMOL] User data Pedro Lacerda
2020/06/07 Re: [PyMOL] View two proteins from one pdb file Neena Susan Eappen
2020/06/07 Re: [PyMOL] View two proteins from one pdb file Joel Tyndall
2020/06/07 [PyMOL] View two proteins from one pdb file Neena Susan Eappen
2020/06/06 [PyMOL] Python 2 support removed from master branch Thomas Holder
2020/06/04 Re: [PyMOL] [EXTERNAL] protecting a group during subsequent aligment Yong Tang
2020/06/04 Re: [PyMOL] [EXTERNAL] protecting a group during subsequent aligment Thomas Holder
2020/06/03 Re: [PyMOL] [EXTERNAL] protecting a group during subsequent aligment Mooers, Blaine H.M. (HSC)
2020/06/03 Re: [PyMOL] [EXTERNAL] Changing Chain ID Mooers, Blaine H.M. (HSC)
2020/06/03 [PyMOL] protecting a group during subsequent aligment Yong Tang
2020/06/03 Re: [PyMOL] [EXTERNAL] Changing Chain ID patricia
2020/06/02 Re: [PyMOL] [EXTERNAL] Changing Chain ID Mooers, Blaine H.M. (HSC)
2020/06/02 [PyMOL] Changing Chain ID patricia
2020/06/02 Re: [PyMOL] [EXTERNAL] Numpy for Pymod Mooers, Blaine H.M. (HSC)
2020/06/02 [PyMOL] Numpy for Pymod Juliet Lee
2020/06/01 [PyMOL] Molecular Docking Grace Ciabattoni
2020/05/27 [PyMOL] Automatic Video generation Mohamed Abdelaal
2020/05/27 Re: [PyMOL] volume representation is extremely dark colored Stanevich, Vitali [JRDUS] via PyMOL-users
2020/05/26 Re: [PyMOL] volume representation is extremely dark colored Akbar Shaikh
2020/05/26 Re: [PyMOL] volume representation is extremely dark colored Thomas Holder
2020/05/26 Re: [PyMOL] volume representation is extremely dark colored Stanevich, Vitali [JRDUS] via PyMOL-users
2020/05/26 Re: [PyMOL] volume representation is extremely dark colored Mooers, Blaine H.M. (HSC)
2020/05/26 [PyMOL] volume representation is extremely dark colored Stanevich, Vitali [JRDUS] via PyMOL-users
2020/05/25 [PyMOL] Importing Non-Protein Structure Files Grace Ciabattoni
2020/05/23 Re: [PyMOL] DSSR-enabled innovative schematics of 3D nucleic acid structures with PyMOL Xiang-Jun Lu
2020/05/23 [PyMOL] DSSR-enabled innovative schematics of 3D nucleic acid structures with PyMOL Xiang-Jun Lu
2020/05/22 Re: [PyMOL] Structure allignmnet in Pymol Joel Tyndall
2020/05/22 [PyMOL] Structure allignmnet in Pymol mtarazkar
2020/05/22 [PyMOL] Updating to 2.4 Grace Ciabattoni
2020/05/21 Re: [PyMOL] [EXTERNAL] How to compute the interface surface between ligand and protein? Thomas Holder
2020/05/21 Re: [PyMOL] [EXTERNAL] How to compute the interface surface between ligand and protein? Thomas Evangelidis
2020/05/21 Re: [PyMOL] tertiary structure/protein folding KurtYilmaz, Nese
2020/05/21 Re: [PyMOL] tertiary structure/protein folding Tamas Hegedus
2020/05/21 Re: [PyMOL] [EXTERNAL] How to compute the interface surface between ligand and protein? Thomas Holder
2020/05/21 Re: [PyMOL] Consistent coloring between sticks of sidechains and cartoon backbones in spectrum coloring Chen, Qiang
2020/05/21 [PyMOL] tertiary structure/protein folding Grace Ciabattoni
2020/05/21 Re: [PyMOL] Consistent coloring between sticks of sidechains and cartoon backbones in spectrum coloring Chen, Qiang
2020/05/21 Re: [PyMOL] Consistent coloring between sticks of sidechains and cartoon backbones in spectrum coloring Mooers, Blaine H.M. (HSC)
2020/05/20 [PyMOL] Consistent coloring between sticks of sidechains and cartoon backbones in spectrum coloring Chen, Qiang
2020/05/20 Re: [PyMOL] [EXTERNAL] How to compute the interface surface between ligand and protein? Mooers, Blaine H.M. (HSC)
2020/05/20 [PyMOL] PyMOL 2.4 released Thomas Holder
2020/05/19 Re: [PyMOL] How to inspect contents of 's' and 'p' for an atom? Thomas Holder
2020/05/19 Re: [PyMOL] How to inspect contents of 's' and 'p' for an atom? Mungo Carstairs (Staff)
2020/05/19 Re: [PyMOL] How to inspect contents of 's' and 'p' for an atom? Mooers, Blaine H.M. (HSC)
2020/05/19 [PyMOL] How to inspect contents of 's' and 'p' for an atom? Mungo Carstairs (Staff)
2020/05/15 Re: [PyMOL] Extract all phi and psi angles Neena Susan Eappen
2020/05/14 [PyMOL] XML-RPC 'label' command format Mungo Carstairs (Staff)
2020/05/12 Re: [PyMOL] Scenes Jared Sampson
2020/05/12 [PyMOL] Scenes Waybright, Timothy (NIH/NCI) [C] via PyMOL-users
2020/05/11 Re: [PyMOL] Extract all phi and psi angles Robert Campbell
2020/05/09 Re: [PyMOL] Extract all phi and psi angles Tamas Hegedus
2020/05/09 Re: [PyMOL] Extract all phi and psi angles Neena Susan Eappen
2020/05/07 Re: [PyMOL] Outlines thickness Gianluca Tomasello
2020/05/07 Re: [PyMOL] Outlines thickness h. adam steinberg
2020/05/07 Re: [PyMOL] Capturing scene pixels without writing image to disk Thomas Holder
2020/05/06 [PyMOL] Outlines thickness Gianluca Tomasello
2020/05/06 Re: [PyMOL] Capturing scene pixels without writing image to disk Antonio Serrano
2020/05/06 Re: [PyMOL] Capturing scene pixels without writing image to disk Thomas Holder
2020/05/05 Re: [PyMOL] Coloring different carbons differently Chris Fage
2020/05/05 Re: [PyMOL] Coloring different carbons differently Chris Fage
2020/05/05 [PyMOL] Coloring different carbons differently Полина Короткова
2020/05/04 [PyMOL] Capturing scene pixels without writing image to disk Antonio Serrano
2020/05/02 Re: [PyMOL] [EXTERNAL] resn variable in label command Mooers, Blaine H.M. (HSC)
2020/05/02 Re: [PyMOL] [EXTERNAL] resn variable in label command C.J.
2020/05/02 [PyMOL] resn variable in label command C.J.
2020/04/30 Re: [PyMOL] moving an object and keep others C.J.
2020/04/30 Re: [PyMOL] For set.view(), there's a Wiki example for the GUI, but not the PyMol API Thomas Holder
2020/04/29 Re: [PyMOL] moving an object and keep others 杨海滨
2020/04/29 [PyMOL] moving an object and keep others C.J.
2020/04/29 Re: [PyMOL] Wait for processing to complete before invoking new commands leifepeterson
2020/04/29 [PyMOL] Two disparate H-bond methods (docked ligand & receptor) leifepeterson
2020/04/29 Re: [PyMOL] Wait for processing to complete before invoking new commands Tamas Hegedus
2020/04/29 [PyMOL] Wait for processing to complete before invoking new commands leifepeterson
2020/04/29 Re: [PyMOL] [EXTERNAL] Number of parameters is off for cmd.set_view? Mooers, Blaine H.M. (HSC)
2020/04/29 [PyMOL] For set.view(), there's a Wiki example for the GUI, but not the PyMol API leifepeterson
2020/04/29 Re: [PyMOL] Number of parameters is off for cmd.set_view? Tamas Hegedus
2020/04/29 [PyMOL] Number of parameters is off for cmd.set_view? leifepeterson
2020/04/29 Re: [PyMOL] Script for drawing docked ligand-active site pics Thomas Evangelidis
2020/04/29 [PyMOL] vector coordinates within same structure Kayce Tomcho
2020/04/29 Re: [PyMOL] Script for drawing docked ligand-active site pics Tamas Hegedus
2020/04/29 [PyMOL] Script for drawing docked ligand-active site pics leifepeterson
2020/04/27 Re: [PyMOL] Extract all phi and psi angles Jarrett Johnson
2020/04/27 [PyMOL] Extract all phi and psi angles Neena Susan Eappen
2020/04/24 Re: [PyMOL] Grid mode problem Tamas Hegedus
2020/04/24 Re: [PyMOL] Grid mode problem George Tzotzos via PyMOL-users
2020/04/24 Re: [PyMOL] Grid mode problem Tamas Hegedus
2020/04/24 [PyMOL] Grid mode problem George Tzotzos via PyMOL-users
2020/04/20 [PyMOL] How to get all side-chain torsion angles of a protein structure Cavi via PyMOL-users
2020/04/16 Re: [PyMOL] incomplete secondary structure Thomas Holder
2020/04/16 Re: [PyMOL] incomplete secondary structure h. adam steinberg
2020/04/16 [PyMOL] incomplete secondary structure honegger
2020/04/15 [PyMOL] incomplete secondary structure h. adam steinberg
2020/04/13 Re: [PyMOL] [EXTERNAL] Apply valence settings to an object Chris Fage
2020/04/10 Re: [PyMOL] [EXTERNAL] Apply valence settings to an object Mooers, Blaine H.M. (HSC)
2020/04/10 [PyMOL] Apply valence settings to an object Chris Fage
2020/04/10 [PyMOL] entering user input in Pymol script and defining sets in Python Luis Garcia Alles
2020/04/08 Re: [PyMOL] Holes in dots Jared Sampson
2020/04/08 [PyMOL] Holes in dots Jason Mosier
2020/04/01 Re: [PyMOL] 13th CCP4/APS Crystallographic School in the US Xu, Qingping via PyMOL-users
2020/03/25 Re: [PyMOL] Compare two structures with the same connectivity butdifferent stereochemistry? Jared Sampson
2020/03/25 Re: [PyMOL] Compare two structures with the same connectivity butdifferent stereochemistry? Peng Yu
2020/03/24 [PyMOL] Compare two structures with the same connectivity but different stereochemistry? Peng Yu
2020/03/22 Re: [PyMOL] [EXTERNAL] Re: broken DNA cartoon h. adam steinberg
2020/03/22 Re: [PyMOL] [EXTERNAL] Re: broken DNA cartoon Mooers, Blaine H.M. (HSC)
2020/03/22 Re: [PyMOL] broken DNA cartoon h. adam steinberg
2020/03/22 Re: [PyMOL] [EXTERNAL] broken DNA cartoon h. adam steinberg
2020/03/21 Re: [PyMOL] API for connect_mode Jake Verburgt
2020/03/21 [PyMOL] API for connect_mode Marcelo Depólo
2020/03/20 Re: [PyMOL] [EXTERNAL] broken DNA cartoon Mooers, Blaine H.M. (HSC)
2020/03/20 Re: [PyMOL] broken DNA cartoon Jared Sampson
2020/03/20 Re: [PyMOL] Selection of elements in object Marko Hyvonen
2020/03/20 [PyMOL] Selection of elements in object Henrik Gotfredsen
2020/03/20 [PyMOL] Accessibility Conformance Report William Marcotte Jr
2020/03/16 [PyMOL] How to load ~/.pymolpluginsrc.py before finish_launching()? Pedro Lacerda
2020/02/25 Re: [PyMOL] How to hide dihedral angle labels in mdo animation using set_dihedral Nanna Holmgaard List
2020/02/25 Re: [PyMOL] How to hide dihedral angle labels in mdo animation using set_dihedral Thomas Holder
2020/02/25 Re: [PyMOL] Accessing vertex normals from surface representation within PyMOL session Thomas Holder
2020/02/25 Re: [PyMOL] Pymol Rendering Thomas Holder
2020/02/24 [PyMOL] Pymol Rendering Seán Downey
2020/02/20 [PyMOL] How to hide dihedral angle labels in mdo animation using set_dihedral Nanna Holmgaard List