Am Samstag, 26. Januar 2008 schrieb Lu Lin: > Hi, Abhi, > You mean save them separately? Is there some way to save them into one > file? Thanks!!
By default, the save command should save all (visible?) atoms. Should be in documentation of save. Any way you can also make a selection of your two molecules and save the selection to one file. Even if you have two files, "cat" will produce a single file quicker than loading them into pymol ;-) Best Martin