Hi All,
Does anyone know of a script that is capable of displaying the
surfaces identified by msms in pymol?
It would be nice to have a program that could read in existing .vert
and .face files. I've included small starting sections of these .face
and .vert files as examples:
# MSMS solvent excluded surface vertices for protein.xyzr
#vertex #sphere density probe_r
282 1296 1.00 1.20
26.022 6.472 7.936 -0.226 0.027 -0.974
0 607 2
24.564 6.680 6.807 0.989 -0.147 -0.033
0 655 2
25.071 7.472 6.969 0.567 -0.807 -0.168
0 657 2
24.499 6.386 6.838 0.956 -0.293 -0.018
0 655 2
25.956 6.178 7.966 -0.259 -0.120 -0.958
0 607 2
25.398 5.470 7.845 0.206 0.471 -0.858
0 608 2
25.738 5.204 7.835 0.376 0.338 -0.863
0 608 2
# MSMS solvent excluded surface faces for protein.xyzr
#faces #sphere density probe_r
560 1296 1.00 1.20
1 5 195 3 3
195 5 196 3 3
195 196 2 3 3
2 196 4 3 3
5 8 6 3 5
6 8 7 3 5
8 11 9 3 7
9 11 10 3 7
Thanks! and all the best,
--Buz
