Evan, You can save the "alignment" object resulting from an align command to an aln file:
align sele1, sele2, object=aln_obj save alignment.aln, aln_obj Cheers, Warren -- DeLano Scientific LLC Subscriber Support Services mailto:del...@delsci.info > -----Original Message----- > From: pymol-users-boun...@lists.sourceforge.net > [mailto:pymol-users-boun...@lists.sourceforge.net] On Behalf > Of Sadler, Evan > Sent: Thursday, February 21, 2008 10:14 AM > To: pymol-users@lists.sourceforge.net > Subject: [PyMOL] Align output > > I know in the past this question was to be addressed in a > future version. > > Anyway, after aligning two structures, is there a way to dump > out the sequence alignment (i.e., as a msf file) or is the > alignment display onscreen the only way to see it? > > Evan Sadler > > -- > J. Evan Sadler, M.D., Ph.D. > Howard Hughes Medical Institute > Washington University > 660 S. Euclid Ave., Box 8022 > St. Louis, MO 63110 > Tel: 314-362-9067 > FAX: 314-454-3012 > email: esad...@wustl.edu > > > > -------------------------------------------------------------- > ----------- > This SF.net email is sponsored by: Microsoft Defy all > challenges. Microsoft(R) Visual Studio 2008. > http://clk.atdmt.com/MRT/go/vse0120000070mrt/direct/01/ > _______________________________________________ > PyMOL-users mailing list > PyMOL-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/pymol-users
