Hi, you are lucky you know - some people dont get pymol started at all and you get this automated :) OK. I think you somehow got pymol in your console startup script or in your shell start sctipt.
1/ Console start script. Open console, goto settings->Configue Konsole (I wonder why is it K) -> session and take a look at execute line. If you find pymol - delete it 2/ You somehow got "pymol" written as a standalone word on a separate line in your .bashrc That means if you have something like this in .bashrc: export PATH=...... pymol bash will launch pymol each time it is started. I assume that it is the second case that will work for your. Good luck with pymol - it is great! SDA