Hi -

Basically I have a bunch of .pdb's with the same name, but with different coordinates, that all reside in different directories.

I want to put a script in my personal bin directory such that I can run pymol and open that set of .pdb's, but then also run a pymol script to set up the session.

ie. combine something like this:

#!/bin/sh
pymol mol1.pdb mol2.pdb mol3.pdb


with something like this:
cmd.hide("everything","all")
cmd.show("ribbon"    ,"all")
cmd.spectrum("count",selection="all",byres=1)
cmd.set('''seq_view''','''1''',quiet=0)


Thanks,
Dave

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