I regret I didn't follow the normal mode of operations...
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On Thu, 4 Sep 2008, David Shin wrote:
Hi -
Basically I have a bunch of .pdb's with the same name, but with different
coordinates, that all reside in different directories.
I want to put a script in my personal bin directory such that I can run
pymol and open that set of .pdb's, but then also run a pymol script to set
up the session.
ie. combine something like this:
#!/bin/sh
pymol mol1.pdb mol2.pdb mol3.pdb
with something like this:
cmd.hide("everything","all")
cmd.show("ribbon" ,"all")
cmd.spectrum("count",selection="all",byres=1)
cmd.set('''seq_view''','''1''',quiet=0)
Thanks,
Dave
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